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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtattttcttgaccatgccttgtgctgagacttgagacttgggttttgacataaacactaatctgcaatgtatgtttgcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAA

Basic information

species Oryza sativa
transcript LOC_Os02g10310.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58597665|gb|CK008193.1|CK008193
EST:     AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG                         GTTTCAGCTTCCAGTAGGTTATCATGGT
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGT
EST: gi|29643533|gb|CB648540.1|CB648540
EST:     AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG                         GTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
EST: gi|88324389|gb|CI566202.1|CI566202
EST:     AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG                         GTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
EST: gi|4969133|gb|AU066037.1|AU066037
EST:     AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG                         GTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
EST: gi|27548667|gb|CA766758.2|CA766758
EST:     AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTG                         GTTTCAGCTTCCAATAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC
genomic: AATTGTGGGTTCATCTTCCGTGGGCCACAGACCCCAGTCAACCCAAATTGgtaatgtatt ... gcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagacttgggttttgacataaacactaatctgcaatgtatgtttgcttcatcagGTTTCAGCTTCCAGTAGGTTATCATGGTCGTGCATCCTCTGTGATTGTATCTGGAACAGACATCATTCGACCCAA
                       cactaat  putative branch site (score: 2)
                                          tttgcttc  putative PPT
                acataaa  TA-rich tract