1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gttaagcatatgtgcctacttataacattgtcagttttacacgtatgtgtcacctttccgtatcccttactcgtttcaatgtgttttttctgaagtctagGTACAAGGAAGCGGAGGGTGACTATAGCAAATACCTGGAGCTAAAACCTGGGAGTTCTTCAGTGGAAAAGGAATTATCTCAACTGCTTCAGGCTCAAAAT
species | Oryza sativa |
transcript | LOC_Os02g10180.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACTCACAAGCTTACAGGCAGCGTGCATCTGTGCTTCGTCACAAGTGCAGTCTAGEST: gi|58679386|gb|CK068073.1|CK068073
genomic: CACTCAGAAGCTTACAGGCAGCGTGCATCTGTGCTTCGTCACAAGT---G-C-AGgtaaaaaaaa ... tgaagt
EST: CACTCAGAAGCTTACAGGCAGCGTGCATCTGTGCTTCGTCACAAGTGCAG GTACAAGGAAGCGGAGGGTGACTATAGCAAATACCTGGAGCTAAAACCTGGEST: gi|58664588|gb|CK053274.1|CK053274
genomic: CACTCAGAAGCTTACAGGCAGCGTGCATCTGTGCTTCGTCACAAGTGCAGgtaaaaaaaa ... tgaagtctagGTACAAGGAAGCGGAGGGTGACTATAGCAAATACCTGGAGCTAAAACCTGG
EST: CACTCAGAAGCTTACAGGCAGCGTGCATCTGTGCTTCGTCACAAGTGCAG GTACAAGGAAGCGGAGGGTGACTATAGCAAATACCTGGAGCTAAAACCTGGEST: gi|29685029|gb|CB681304.1|CB681304
genomic: CACTCAGAAGCTTACAGGCAGCGTGCATCTGTGCTTCGTCACAAGTGCAGgtaaaaaaaa ... tgaagtctagGTACAAGGAAGCGGAGGGTGACTATAGCAAATACCTGGAGCTAAAACCTGG
EST: CACTCAGAAGCTTACAGGCAGCGTGCATCTGTGCTTCGTCACAAGTGCAG GTACAAGGAAGCGGAGGGTGACTATAGCAAATACCTGGAGCTAAAACCTGGEST: gi|29663959|gb|CB660234.1|CB660234
genomic: CACTCAGAAGCTTACAGGCAGCGTGCATCTGTGCTTCGTCACAAGTGCAGgtaaaaaaaa ... tgaagtctagGTACAAGGAAGCGGAGGGTGACTATAGCAAATACCTGGAGCTAAAACCTGG
EST: CACTCAGAAGCTTACAGGCAGCGTGCATCTGTGCTTCGTCACAAGTGCAGTCTAGEST: gi|58694698|gb|CK083385.1|CK083385
genomic: CACTCAGAAGCTTACAGGCAGCGTGCATCTGTGCTTCGTCACAAGT---G-C-AGgtaaaaaaaa ... tgaagt
EST: CACTCAGAAGCTTACAGGCAGCGTGCATCTGTGCTTCGTCACAAGTGCAG GTACAAGGAAGCGGAGGGTGACTATAGCAAATACCTGGAGCTAAAACCTGG
genomic: CACTCAGAAGCTTACAGGCAGCGTGCATCTGTGCTTCGTCACAAGTGCAGgtaaaaaaaa ... tgaagtctagGTACAAGGAAGCGGAGGGTGACTATAGCAAATACCTGGAGCTAAAACCTGG
tgtgtcacctttccgtatcccttactcgtttcaatgtgttttttctgaagtctagGTACAAGGAAGCGGAGGGTGACTATAGCAAATACCTGGAGCTAAAACCTGGGAGTTCTTCAGTGGAAAAGGAATTATCTCAACTGCTTCAGGCTCAAAAT
cccttac putative branch site (score: 3)
tgttttttct putative PPT
tgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaagcatatgtgcctacttataacattgtcagttttacacgtatgtgtcacctttccgtatcccttactcgtttcaatgtgttttttctgaagtctagGTACAAGGAAGCGGAGGGTGACTATAGCAAATACCTGGAGCTAAAACCTGGGAGTTCTTCAGTGGAAAAGGAATTATCTCAACTGCTTCAGGCTCAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA