1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tataaaagtattagcattttcttcctttggatcccctactgctgtagagttatcgaaacagcagatttactggctgagtaatacttttttattgaaacagTGCAAAGAAGGATGAAGGTGATACAACCATTCAGTTTCAGCAATGCATCAAGATCCTGGCAGACAAAGTTGGTTTTCTATCACGACAGAGTGCTGAGCTG
species | Oryza sativa |
transcript | LOC_Os02g08350.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
agagttatcgaaacagcagatttactggctgagtaatacttttttattgaaacagTGCAAAGAAGGATGAAGGTGATACAACCATTCAGTTTCAGCAATGCATCAAGATCCTGGCAGACAAAGTTGGTTTTCTATCACGACAGAGTGCTGAGCTG
cttttttatt CT-rich tract
agtaatacttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataaaagtattagcattttcttcctttggatcccctactgctgtagagttatcgaaacagcagatttactggctgagtaatacttttttattgaaacagTGCAAAGAAGGATGAAGGTGATACAACCATTCAGTTTCAGCAATGCATCAAGATCCTGGCAGACAAAGTTGGTTTTCTATCACGACAGAGTGCTGAGCTG
- - - - - - - - - - - - - -tggatcc
- - - - - - - - - - - - - - - - - - -actgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagcaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctggctg