1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctgcagtacagaattttgtcaccactgaaactgtcttctccttcagaaacagcaggaaatgattcttggccgtactgacgagctgtggggaattttgcagGCTATCTGAATGATCCTGAGGCGACCAAGAACACCATCGACGAGGACGGGTGGCTGCACACCGGAGACATCGGCTTCGTCGACGACGACGACGAGATCTT
species | Oryza sativa |
transcript | LOC_Os02g08100.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGGAACCAGTCCGGCGAGATCTGCATCCGCGGAGAACAGATCATGAAAG GCTATCTGAATGATCCTGAGGCGACCAAGAACACCATCGACGAGGACGGGTEST: gi|572302|gb|D41813.1|D41813
genomic: CCGGAACCAGTCCGGCGAGATCTGCATCCGCGGAGAACAGATCATGAAAGgtacacacat ... aattttgcagGCTATCTGAATGATCCTGAGGCGACCAAGAACACCATCGACGAGGACGGGT
EST: CCGGAACCAGTCCGGCGAGATCTGCATCCGCGGAGAACAGATCATGAAAG GCTATCTGAATGATCCTGAGGCGACCAAGAACACCATCGACGAGGACGGGTEST: gi|570200|gb|D41049.1|D41049
genomic: CCGGAACCAGTCCGGCGAGATCTGCATCCGCGGAGAACAGATCATGAAAGgtacacacat ... aattttgcagGCTATCTGAATGATCCTGAGGCGACCAAGAACACCATCGACGAGGACGGGT
EST: CCGGAACCAGTCCGGCGAGATCTGCATCCGCGGAGAACAGATCATGAAAG GCTATCTGAATGATCCTGAGGCGACCAAGAACACCATCGACGAGGACGGGTEST: gi|29659213|gb|CB655488.1|CB655488
genomic: CCGGAACCAGTCCGGCGAGATCTGCATCCGCGGAGAACAGATCATGAAAGgtacacacat ... aattttgcagGCTATCTGAATGATCCTGAGGCGACCAAGAACACCATCGACGAGGACGGGT
EST: CCGGAACCAGTCCGGCGAGATCTGCATCCGCGGAGAACAGATCATGANAG GCTATCTGAATGATCCTGEST: gi|29688318|gb|CB684593.1|CB684593
genomic: CCGGAACCAGTCCGGCGAGATCTGCATCCGCGGAGAACAGATCATGAAAGgtacacacat ... aattttgcagGCTATCTGAATGATCCTG
EST: CCGGAACCAGTCCGGCGAGATCTGCATCCGCGGAGAACAGATCATGAAAG GCTATCTGAATGATCCTGAGGCGACCAAGAACACCATCGACGAGGACGGGT
genomic: CCGGAACCAGTCCGGCGAGATCTGCATCCGCGGAGAACAGATCATGAAAGgtacacacat ... aattttgcagGCTATCTGAATGATCCTGAGGCGACCAAGAACACCATCGACGAGGACGGGT
gaaacagcaggaaatgattcttggccgtactgacgagctgtggggaattttgcagGCTATCTGAATGATCCTGAGGCGACCAAGAACACCATCGACGAGGACGGGTGGCTGCACACCGGAGACATCGGCTTCGTCGACGACGACGACGAGATCTT
tactgac putative branch site (score: 136)
aaatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcagtacagaattttgtcaccactgaaactgtcttctccttcagaaacagcaggaaatgattcttggccgtactgacgagctgtggggaattttgcagGCTATCTGAATGATCCTGAGGCGACCAAGAACACCATCGACGAGGACGGGTGGCTGCACACCGGAGACATCGGCTTCGTCGACGACGACGACGAGATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
ctgcagt
- - - - - - - - - tcaccac
- - - - - - - - - - - - - - - - - - - -ccttcag
- - - - - - - - - - - - - - - - - - - - - - - - -cagcagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgagctg