1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaagagtattactgttaattttattctctttgcccatgattgatccttgatcgtcatgtcatctaattatacatgcatagtaattaatagatcaataggaaattcaaagtctgtacttatatattggcagaagttatgttgttttcgtatgtatcctggtcaggttttgtgactatttacttttctttcattgtagAAATCTTAGCAACAACAATATTGGTGGAACTATACCAGAAGATCTACCTGTTACACTGCAGCATTT
species | Oryza sativa |
transcript | LOC_Os02g07960.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGGAAGGACAGTTAGGCAGCCTGGGGAACTTCACTTCAATAACCACTAT AAATCTTAGCAACAACAATATTGGTGGAACTATACCAGAAGATCTACCTGTEST: gi|86831768|gb|CI303208.1|CI303208
genomic: TTGGAAGGACAGTTAGGCAGCCTGGGGAACTTCACTTCAATAACCACTATgtaagagtat ... ttcattgtagAAATCTTAGCAACAACAATATTGGTGGAACTATACCAGAAGATCTACCTGT
EST: TTGGAAGGACAGTTAGGCAGCCTGGGGAACTTCACTTCAATAACCACTAT AAATCTTAGCAACAACAATATTGGTGGAACTATACCAGAAGATEST: gi|29621905|gb|CB626916.1|CB626916
genomic: TTGGAAGGACAGTTAGGCAGCCTGGGGAACTTCACTTCAATAACCACTATgtaagagtat ... ttcattgtagAAATCTTAGCAACAACAATATTGGTGGAACTATACCAGAAGAT
EST: TTGGAAGGACAGTTAGGCAGCCTGGGGAACTTCACTTCAATAACCACTAT AAATCTTAGCAACAACAATATTGGTGGAACTATACCAGAAGATCTACCTGT
genomic: TTGGAAGGACAGTTAGGCAGCCTGGGGAACTTCACTTCAATAACCACTATgtaagagtat ... ttcattgtagAAATCTTAGCAACAACAATATTGGTGGAACTATACCAGAAGATCTACCTGT
ttttcgtatgtatcctggtcaggttttgtgactatttacttttctttcattgtagAAATCTTAGCAACAACAATATTGGTGGAACTATACCAGAAGATCTACCTGTTACACTGCAGCATTT
ctatttacttttcttt CT-rich tract
tatttacttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagtattactgttaattttattctctttgcccatgattgatccttgatcgtcatgtcatctaattatacatgcatagtaattaatagatcaataggaaattcaaagtctgtacttatatattggcagaagttatgttgttttcgtatgtatcctggtcaggttttgtgactatttacttttctttcattgtagAAATCTTAGCAACAACAATATTGGTGGAACTATACCAGAAGATCTACCTGTTACACTGCAGCATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG