1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctcattacatgcgcaccataataatcaatttgagttgagtccggcaaatagtttctccaactcgactggttattttaactttggtatctgaattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAGGGCTCGTGCTGTCTGAATGCCTAAAGAT
species | Oryza sativa |
transcript | LOC_Os02g06770.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|163925821|gb|EG709617.1|EG709617
genomic: ATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88543595|gb|CI473616.1|CI473616
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|163926082|gb|EG711810.1|EG711810
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88433512|gb|CI594326.1|CI594326
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAAGAAG GCAGGCATATTTTAAGCGAGAGGTEST: gi|88560675|gb|CI491361.1|CI491361
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGT
EST: AATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88479926|gb|CI417197.1|CI417197
genomic: AATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88538683|gb|CI467735.1|CI467735
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88478336|gb|CI415607.1|CI415607
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88560174|gb|CI490812.1|CI490812
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88524163|gb|CI452057.1|CI452057
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88552202|gb|CI482333.1|CI482333
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAEST: gi|88542912|gb|CI472271.1|CI472271
genomic: CTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
EST: CCAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAG GCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
genomic: CAAACACTGAGATTGACAAGCTTCTGCTCCAGAAATCTGCATTCAACAAGgttagtaccc ... aattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAA
aaatagtttctccaactcgactggttattttaactttggtatctgaattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAGGGCTCGTGCTGTCTGAATGCCTAAAGAT
ttttaac putative branch site (score: 2)
ttattttaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcattacatgcgcaccataataatcaatttgagttgagtccggcaaatagtttctccaactcgactggttattttaactttggtatctgaattgtgcagGCAGGCATATTTTCAGCGAGAGGTAAGATCACGCATGCCAATGTTGAGAAAGGGCTCGTGCTGTCTGAATGCCTAAAGAT
- - -tacatgc
- - - - - - - accataa
- - - - - - - - - - - - - - - - - - - -tccggca