1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttacaaagttggatacagctcttgttgcaatcgtttaatatacaacttttgttctgctgcaattgatctttgatcactaactctggtggcccatttacagTGAATGTCCTCAGGAAGCCTTGGAAGCTGTGTCAACTCTAATTTTTGCCACTGCTAGATTTCCTGAGTTGCCTGAACTGTGCGACCTCAGACATATGTTC
species | Oryza sativa |
transcript | LOC_Os02g06430.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGTACTGCGAGTACATAGTGAAGCAGCTCAACAACCTGCAGAAACAGAA TGAATGTCCTCAGGAAGCCTTGGAAGCTGTGTCAACTCTAATTTTTGCCACEST: gi|15008799|gb|AU223187.1|AU223187
genomic: CAGTACTGCGAGTACATAGTGAAGCAGCTCAACAACCTGCAGAAACAGAAgtatgtttga ... ccatttacagTGAATGTCCTCAGGAAGCCTTGGAAGCTGTGTCAACTCTAATTTTTGCCAC
EST: CAGTACTGCGAGTACATAGTGAAGCAGCTCAACAACCTGCAGAAACAGAA TGAATGTCCTCAGGAAGCCTTGGAAGCTGTGTCAACTCTAATTTTTGCCAC
genomic: CAGTACTGCGAGTACATAGTGAAGCAGCTCAACAACCTGCAGAAACAGAAgtatgtttga ... ccatttacagTGAATGTCCTCAGGAAGCCTTGGAAGCTGTGTCAACTCTAATTTTTGCCAC
cttttgttctgctgcaattgatctttgatcactaactctggtggcccatttacagTGAATGTCCTCAGGAAGCCTTGGAAGCTGTGTCAACTCTAATTTTTGCCACTGCTAGATTTCCTGAGTTGCCTGAACTGTGCGACCTCAGACATATGTTC
cactaac putative branch site (score: 5)
cccattt putative PPT
aattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacaaagttggatacagctcttgttgcaatcgtttaatatacaacttttgttctgctgcaattgatctttgatcactaactctggtggcccatttacagTGAATGTCCTCAGGAAGCCTTGGAAGCTGTGTCAACTCTAATTTTTGCCACTGCTAGATTTCCTGAGTTGCCTGAACTGTGCGACCTCAGACATATGTTC
- - - - - - -tacagct
- - - - - - - - - - -ttgttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggtgg