1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggtacatggcagttcaaattatctgaataacaggatttcatattagtattatttaacacatgttaatcaatcataatatttctcctgtccacccttgcagCAATTGCAGTTTCAAGGGATCACAAACCCGACCAGTCAGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTG
species | Oryza sativa |
transcript | LOC_Os02g05630.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTGCTAATG-TGNGAGATTCTAGAGCAGTTGTTTGTAGAGGCGGGGATG CAATTGCAGTTTCAAGGGATCACAAACCCGACCAGTCAGATGAGAGACAAAEST: gi|5003494|gb|AU068643.1|AU068643
genomic: GTTGCTAATGTTG-GAGATTCTAGAGCAGTTGTTTGTAGAGGCGGGGATGgtaagtcact ... acccttgcagCAATTGCAGTTTCAAGGGATCACAAACCCGACCAGTCAGATGAGAGACAAA
EST: GGTTGCTAATGTTGGAGATTCTAGAGCAGTTGTTTGTAGAGGCGGGGATG CAATTGCAGTTTCAAGGGATCACAAACCCGACCAGTCAGATGAGAGACAAAEST: gi|33680351|gb|CF308590.1|CF308590
genomic: GGTTGCTAATGTTGGAGATTCTAGAGCAGTTGTTTGTAGAGGCGGGGATGgtaagtcact ... acccttgcagCAATTGCAGTTTCAAGGGATCACAAACCCGACCAGTCAGATGAGAGACAAA
EST: GGTTGCTAATGTTGGAGATTCTAGAGCAGTTGTTTGTAGAGGCGGGGATG CAATTGCAGTTTCAAGGGATCACAAACCCGACCAGTCAGATGAGAGACAAAEST: gi|163920197|gb|EG714431.1|EG714431
genomic: GGTTGCTAATGTTGGAGATTCTAGAGCAGTTGTTTGTAGAGGCGGGGATGgtaagtcact ... acccttgcagCAATTGCAGTTTCAAGGGATCACAAACCCGACCAGTCAGATGAGAGACAAA
EST: TTGTTTGTAGAGGCGGGGATG CAATTGCAGTTTCAAGGGATCACAAACCCGACCAGTCAGATGAGAGACAAAEST: gi|33675133|gb|CF303372.1|CF303372
genomic: TTGTTTGTAGAGGCGGGGATGgtaagtcact ... acccttgcagCAATTGCAGTTTCAAGGGATCACAAACCCGACCAGTCAGATGAGAGACAAA
EST: GGTTGCTAATGTTGGAGATTCTAGAGCAGTTGTTTGTATAGGCGGGGATG CAATTGCAGTTTCAAGGGATCACAAACCCGACCAGTCAGATGAGAGACAAAEST: gi|33681625|gb|CF309864.1|CF309864
genomic: GGTTGCTAATGTTGGAGATTCTAGAGCAGTTGTTTGTAGAGGCGGGGATGgtaagtcact ... acccttgcagCAATTGCAGTTTCAAGGGATCACAAACCCGACCAGTCAGATGAGAGACAAA
EST: GGTTGCTAATGTTGGAGATTCTAGAGCAGTTGTTTGTAGAGGCGGGGATG CAATTGCAGTTTCAAGGGATCACAAACCCGACCAGTCAGATGAGAGACAAA
genomic: GGTTGCTAATGTTGGAGATTCTAGAGCAGTTGTTTGTAGAGGCGGGGATGgtaagtcact ... acccttgcagCAATTGCAGTTTCAAGGGATCACAAACCCGACCAGTCAGATGAGAGACAAA
gtattatttaacacatgttaatcaatcataatatttctcctgtccacccttgcagCAATTGCAGTTTCAAGGGATCACAAACCCGACCAGTCAGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTG
tgttaat putative branch site (score: 77)
tttctcctgtccaccc putative PPT
atgttaatcaatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtacatggcagttcaaattatctgaataacaggatttcatattagtattatttaacacatgttaatcaatcataatatttctcctgtccacccttgcagCAATTGCAGTTTCAAGGGATCACAAACCCGACCAGTCAGATGAGAGACAAAGAATTGAGGACGCTGGGGGCTTCGTGATGTGGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
-gtacatg
- - - - - - - - - - - - -aataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgtt