1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatacaaaaagtcttatcccttttccattgtttcaacaacacatattttggtgatgttacaaatccctgtactttgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAAAGGGCTTGATGTGATTCAGCAGGCTCAATCTGGAACAGGAAAAACTGC
species | Oryza sativa |
transcript | LOC_Os02g05330.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGEST: gi|88728620|gb|CI752130.1|CI752130
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTG
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTEST: gi|29642250|gb|CB647257.1|CB647257
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTT
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|29666181|gb|CB662456.1|CB662456
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|88360157|gb|CI610271.1|CI610271
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|33685122|gb|CF313361.1|CF313361
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGGATTGTTCCCTTCTGCEST: gi|29642449|gb|CB647456.1|CB647456
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGG-ATTGTTCCCTTCTGC
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|86894710|gb|CI308357.1|CI308357
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCGTCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|58672128|gb|CK060814.1|CK060814
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|55410405|gb|CV722781.1|CV722781
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|88402741|gb|CI613189.1|CI613189
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGEST: gi|58607105|gb|CK035138.1|CK035138
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTG
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|33655674|gb|CF278288.1|CF278288
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|58673254|gb|CK061940.1|CK061940
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|29666180|gb|CB662455.1|CB662455
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|58693161|gb|CK081848.1|CK081848
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|58692381|gb|CK081068.1|CK081068
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|88738783|gb|CI762291.1|CI762291
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCEST: gi|58600294|gb|CK010822.1|CK010822
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATC
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|58609408|gb|CK037441.1|CK037441
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|58668040|gb|CK056726.1|CK056726
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|58685951|gb|CK074638.1|CK074638
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|58661671|gb|CK050351.1|CK050351
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|58689524|gb|CK078211.1|CK078211
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|86884303|gb|CI311706.1|CI311706
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|58685755|gb|CK074442.1|CK074442
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|58696214|gb|CK084901.1|CK084901
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|29644972|gb|CB649979.1|CB649979
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|58602353|gb|CK012881.1|CK012881
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|33653523|gb|CF276137.1|CF276137
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|29684184|gb|CB680459.1|CB680459
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|88395055|gb|CI609371.1|CI609371
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAAC-TTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|86888514|gb|CI303796.1|CI303796
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGEST: gi|58660136|gb|CK048816.1|CK048816
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAG
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|86890857|gb|CI305795.1|CI305795
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|33795013|gb|CF323385.1|CF323385
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAEST: gi|88761507|gb|CI771063.1|CI771063
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCA
EST: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATG GTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGA
genomic: TGATGACATGGGCCTCCAAGAGAACCTTCTCAGAGGCATCTATGCTTATGgtatacaaaa ... tgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGA
gtttcaacaacacatattttggtgatgttacaaatccctgtactttgatgtgtagGTTTTGAGAAGCCATCAGCTATTCAGCAAAGGGGGATTGTTCCCTTCTGCAAAGGGCTTGATGTGATTCAGCAGGCTCAATCTGGAACAGGAAAAACTGC
ctttgat putative branch site (score: 50)
acatatttt TA-rich tract