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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaataaagctaaatctttaaacatgacacgcctttcgttctacaaaattatctatttattcaaggaaaaaaattgtgatagattgttatctcaatgatagGTATATGATGGTTGCCAGAGCTGGGAGACAGCATTTATAATTCAAGCGTTTTGTGCTACTGATCTTGTAAATGAGTATGCTTCTACTGTTCAGAGAGCCC

Basic information

species Oryza sativa
transcript LOC_Os02g04750.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g04750.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G006937_T01 (Zea mays), 3'ss of exon 8
-gaataaagctaaatctttaaacatgacacgcctttcgt-tctacaaaattatctatttattcaaggaaaaaaattgtgatagattgt-tatctcaatgatagGTATATGATGGTTGCCAGAGCTGGGAGACAGCATTTATAATTCAAGCGTTTTGTGCTACTGATCTTGTAAATGAGTATGCTTCTACTGTTCAGAGAGCCC
 |  |     ||    |  ||  ||      | | | |  | | || ||  || || ||||   |||| | |  |    ||   | ||   |  |  ||||||||||||||||| |||||||||||||||||| |||| ||||||||||| ||||| ||||| |||||||| ||||| |||| ||| ||| ||||||||||| 
agtgtcttagtatggttgcaagtatattggacatgttgaatatgcacaaaaatttacttat---aggatatagctctgcatgactggtgcgttaccctgatagGTATATGATGGCTGCCAGAGCTGGGAGACATCATTCATAATTCAAGCATTTTGCGCTACAGATCTTGTTAATGACTATGGTTCAACTCTTCAGAGAGCCT

upper sequence: LOC_Os02g04750.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G468929_T01 (Zea mays), 3'ss of exon 8
-gaataaagctaaat--ctttaaacatgacacgcctttcgttctacaaaattatctatttattcaaggaaaaaaattgtgatagattgttatctcaatgatagGTATATGATGGTTGCCAGAGCTGGGAGACAGCATTTATAATTCAAGCGTTTTGTGCTACTGATCTTGTAAATGAGTATGCTTCTACTGTTCAGAGAGCCC
   | |||| || ||  |    | |||||     || ||     | | |  |     | || | |   |  |||||||   || ||   | | |   |||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||||||| | | ||| ||||||||||||
atgacaaagatagatgccccccatcatgaactatctgtcacaaaatacacgttctgttatactaatttattaaaattgcagtacatctgtgtgt---tgatagGTATATGATGGTTGTCAGAGCTGGGAGACAGCTTTTATAATTCAAGCATTTTGTGCTACAGATCTTGTCAATGAGTATGGTCCAACTATTCAGAGAGCCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattatctatttattcaaggaaaaaaattgtgatagattgttatctcaatgatagGTATATGATGGTTGCCAGAGCTGGGAGACAGCATTTATAATTCAAGCGTTTTGTGCTACTGATCTTGTAAATGAGTATGCTTCTACTGTTCAGAGAGCCC
                                        ttatctc  CT-rich tract
       tatttattcaaggaaa  TA-rich tract