1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aataaaagtcaataccttgcacgtatgaataggcctattgctgctgcttttctaatttttgcaattatgtagttactaactatatattttctacctcaagTTCCAGAGTACATTCACGAAGAGGAAAATCAAAGTGCTGTCCCAATAACATCTGAAGAAAGTGATGCTGTTGAGAACTATACTTACTCTGAGCCACCACA
species | Oryza sativa |
transcript | LOC_Os02g03890.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCAGGACAACTTCGAGACCAACATGGCATCCAACTCCGTCGTCGAACCTG TTCCAGAGTACATTCACGAAGAGGAAAATCAAAGTGCTGTCCCAATAACATEST: gi|58596080|gb|CK006608.1|CK006608
genomic: CCAGGACAACTTCGAGACCAACATGGCATCCAACTCCGTCGTCGAACCTGgtataatata ... ctacctcaagTTCCAGAGTACATTCACGAAGAGGAAAATCAAAGTGCTGTCCCAATAACAT
EST: CCAGGACAACTTCGAGACCAACATGGCATCCAACTCCGTCGTCGAACCTG TTCCAGAGTACATTCACGAAGAGGAAAATCAAAGTGCTGTCCCAATAACATEST: gi|112787037|gb|EE591928.1|EE591928
genomic: CCAGGACAACTTCGAGACCAACATGGCATCCAACTCCGTCGTCGAACCTGgtataatata ... ctacctcaagTTCCAGAGTACATTCACGAAGAGGAAAATCAAAGTGCTGTCCCAATAACAT
EST: AACTCCGTCGTGAC-AACCTG TTCCAGAGTACATTCACGAAGAGGAAAATCAAAGTGCTGTCCCAATTACAEST: gi|66922134|gb|CX108982.1|CX108982
genomic: AACTCCGTCGT--CGAACCTGgtataatata ... ctacctcaagTTCCAGAGTACATTCACGAAGAGGAAAATCAAAGTGCTGTCCCAATAACA
EST: CCAGGACAACTTCGAGACCAACATGGCATCCAACTCCGTCGTCGAACCTG TTCCAGAGTACATTCACGAAGAGGAAAATCAAAGTGCTGTCCCAATAACAT
genomic: CCAGGACAACTTCGAGACCAACATGGCATCCAACTCCGTCGTCGAACCTGgtataatata ... ctacctcaagTTCCAGAGTACATTCACGAAGAGGAAAATCAAAGTGCTGTCCCAATAACAT
gcttttctaatttttgcaattatgtagttactaactatatattttctacctcaagTTCCAGAGTACATTCACGAAGAGGAAAATCAAAGTGCTGTCCCAATAACATCTGAAGAAAGTGATGCTGTTGAGAACTATACTTACTCTGAGCCACCACA
tactaac putative branch site (score: 0)
ttttctacctc putative PPT
aattatgtagttacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataaaagtcaataccttgcacgtatgaataggcctattgctgctgcttttctaatttttgcaattatgtagttactaactatatattttctacctcaagTTCCAGAGTACATTCACGAAGAGGAAAATCAAAGTGCTGTCCCAATAACATCTGAAGAAAGTGATGCTGTTGAGAACTATACTTACTCTGAGCCACCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
aataaaa
- - - - - - - ccttgca
- - - - - - - - - - - - - - - - - - - tgctgct