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gtaagattagatatatcctccatttcttcttctgtagttgatacattttcttctatctttttgtgtcatcattctttagtttccattcccgtacagcttctagggccataaggccattacttactggcaccttccattttgtcagAAAGAACAGCCGTTATAGTGAGAAAGATGCTGCAGTGGTGGTGCGGCAGATGCTCAAAGTGGCAGCTGAGTGCCATCTGCATGGGCTAGTTCACCGAGAT
species | Oryza sativa |
transcript | LOC_Os02g03410.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTATGTGAGGGTGGTGAACTATTGGACCGGATTTTGGCAAA AAAGAACAGCCGTTATAGTGAGAAAGATGCTGCAGTGGTGGTGCGGCAGATEST: gi|29644214|gb|CB649221.1|CB649221
genomic: ACTATGTGAGGGTGGTGAACTATTGGACCGGATTTTGGCAAAgtaagattag ... attttgtcagAAAGAACAGCCGTTATAGTGAGAAAGATGCTGCAGTGGTGGTGCGGCAGAT
EST: ACTATGTGAGGGTGGTGAACTATTGGACCGGATTTTGGCAAA AAAGAACAGCCGTTATAGTGAGAAAGATGCTGCAGTGGTGGTGCGGCAGATEST: gi|218492077|gb|FG943382.1|FG943382
genomic: ACTATGTGAGGGTGGTGAACTATTGGACCGGATTTTGGCAAAgtaagattag ... attttgtcagAAAGAACAGCCGTTATAGTGAGAAAGATGCTGCAGTGGTGGTGCGGCAGAT
EST: ACTATGTGAGGGTGGTGAACTATTGGACCGGATTTTGGCAAA AAAGAACAGCCGTTATAGTGAGAAAGATGCTGCEST: gi|29657420|gb|CB653695.1|CB653695
genomic: ACTATGTGAGGGTGGTGAACTATTGGACCGGATTTTGGCAAAgtaagattag ... attttgtcagAAAGAACAGCCGTTATAGTGAGAAAGATGCTGC
EST: ACTATGTGAGGGTGGTGAACTATTGGACCGGATTTTGGCAAA AAAGAACAGCCGTTATAGTGAGAAAGATGCTGCAGTGGTGGTGCGGCAGAT
genomic: ACTATGTGAGGGTGGTGAACTATTGGACCGGATTTTGGCAAAgtaagattag ... attttgtcagAAAGAACAGCCGTTATAGTGAGAAAGATGCTGCAGTGGTGGTGCGGCAGAT
gtacagcttctagggccataaggccattacttactggcaccttccattttgtcagAAAGAACAGCCGTTATAGTGAGAAAGATGCTGCAGTGGTGGTGCGGCAGATGCTCAAAGTGGCAGCTGAGTGCCATCTGCATGGGCTAGTTCACCGAGAT
tacttac putative branch site (score: 2)
ccttccattttgtc putative PPT
attactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattagatatatcctccatttcttcttctgtagttgatacattttcttctatctttttgtgtcatcattctttagtttccattcccgtacagcttctagggccataaggccattacttactggcaccttccattttgtcagAAAGAACAGCCGTTATAGTGAGAAAGATGCTGCAGTGGTGGTGCGGCAGATGCTCAAAGTGGCAGCTGAGTGCCATCTGCATGGGCTAGTTCACCGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA