1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgatttatgaacgtggacgtgtgctcgtccaggtacatacggggggagtaattaacaagcatgattatatttatgagcgttattatcatccatgttgcagGGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCAAAGAGGAGCATGTGGTTGTG
species | Oryza sativa |
transcript | LOC_Os02g01220.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCTTCATGTTCGTCACGCCGCAAG GGAGGGAAAAGAATCCTCTGTTTGTGGAACAGTTCTCGTCGCTAGTGAGCAEST: gi|58593836|gb|CF992144.1|CF992144
genomic: CCCTTCATGTTCGTCACGCCGCAAGgcaagtcagc ... catgttgcagGGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCA
EST: CCATCTACACAACTCCCTCAACGTGCCCTTCATGTTCGTCACGCCGCAAG GGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCAEST: gi|33666398|gb|CF297365.1|CF297365
genomic: CCATCTACACAACTCCCTCAACGTGCCCTTCATGTTCGTCACGCCGCAAGgcaagtcagc ... catgttgcagGGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCA
EST: CTCAACGTGCCCTTCATGTTCGTCACGCCGCAAG GGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCAEST: gi|86525933|gb|CI166139.1|CI166139
genomic: CTCAACGTGCCCTTCATGTTCGTCACGCCGCAAGgcaagtcagc ... catgttgcagGGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCA
EST: CCATCTACACAACTCCCTCAACGTGCCCTTCATGTTCGTCACGCCGCAAG GGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCAEST: gi|86547077|gb|CI187283.1|CI187283
genomic: CCATCTACACAACTCCCTCAACGTGCCCTTCATGTTCGTCACGCCGCAAGgcaagtcagc ... catgttgcagGGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCA
EST: CCATCTACACAACTCCCTCAACGTGCCCTTCATGTTCGTCACGCCGCAAG GGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCAEST: gi|86545060|gb|CI185266.1|CI185266
genomic: CCATCTACACAACTCCCTCAACGTGCCCTTCATGTTCGTCACGCCGCAAGgcaagtcagc ... catgttgcagGGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCA
EST: CCATCTACACAACTCCCTCAACGTGCCCTTCATGTTCGTCACGCCGCAAG GGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCAEST: gi|88202886|gb|CI200738.1|CI200738
genomic: CCATCTACACAACTCCCTCAACGTGCCCTTCATGTTCGTCACGCCGCAAGgcaagtcagc ... catgttgcagGGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCA
EST: CCATCTACACAACTCCCTCAACGTGCCCTTCATGTTCGTCACGCCGCAAG GGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCAEST: gi|88998270|gb|CI038155.1|CI038155
genomic: CCATCTACACAACTCCCTCAACGTGCCCTTCATGTTCGTCACGCCGCAAGgcaagtcagc ... catgttgcagGGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCA
EST: TGCCCTTCATGTTCGTCACGCCGCAAG GGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCAEST: gi|88977408|gb|CI025145.1|CI025145
genomic: TGCCCTTCATGTTCGTCACGCCGCAAGgcaagtcagc ... catgttgcagGGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCA
EST: CCATCTACACAACTCCCTCAACGTGCCCTTCATGTTCGTCACGCCGCAAG GGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCAEST: gi|88239644|gb|CI238806.1|CI238806
genomic: CCATCTACACAACTCCCTCAACGTGCCCTTCATGTTCGTCACGCCGCAAGgcaagtcagc ... catgttgcagGGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCA
EST: CGATCTACACAACTCCCTCAACGTGCCCTTCATGTTCGTCACGCCGCAAG GGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCAEST: gi|88201999|gb|CI202354.1|CI202354
genomic: CCATCTACACAACTCCCTCAACGTGCCCTTCATGTTCGTCACGCCGCAAGgcaagtcagc ... catgttgcagGGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCA
EST: CCATCTACACAACTCCCTCAACGTGCCCTTCATGTTCGTCACGCCGCAAG GGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCAEST: gi|88201185|gb|CI201540.1|CI201540
genomic: CCATCTACACAACTCCCTCAACGTGCCCTTCATGTTCGTCACGCCGCAAGgcaagtcagc ... catgttgcagGGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCA
EST: CCATCTACACAACTCCCTCAACGTGCCCTTCATGTTCGTCACGCCGCAAG GGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCAEST: gi|88200758|gb|CI200608.1|CI200608
genomic: CCATCTACACAACTCCCTCAACGTGCCCTTCATGTTCGTCACGCCGCAAGgcaagtcagc ... catgttgcagGGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCA
EST: CAACGTGCCCTTCATGTTCGTCACGCCGCAAG GGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCAEST: gi|87034626|gb|CI189250.1|CI189250
genomic: CAACGTGCCCTTCATGTTCGTCACGCCGCAAGgcaagtcagc ... catgttgcagGGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCA
EST: TTCATGTTCGTCACGCCGCAAG GGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCA
genomic: TTCATGTTCGTCACGCCGCAAGgcaagtcagc ... catgttgcagGGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCA
gagtaattaacaagcatgattatatttatgagcgttattatcatccatgttgcagGGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCAAAGAGGAGCATGTGGTTGTG
aattaac putative branch site (score: 59)
atgattatatttatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatttatgaacgtggacgtgtgctcgtccaggtacatacggggggagtaattaacaagcatgattatatttatgagcgttattatcatccatgttgcagGGAGGGAAAAGAATCCTCTGTTTGTGGAGCAGTTCTCGTCGCTGGTGAGCAAAGAGGAGCATGTGGTTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - -cgtgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aagcatg