1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatatttcagaggatagtaggaatcatggacagctaaatatttcatctaattttgtctcagtaagctgcagtactaaagattgatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGTGTTATCTCAGAAACAGGATTTATTCTGAAGGAAGATGAAGATAACCTGG
species | Oryza sativa |
transcript | LOC_Os01g74580.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAG GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGTEST: gi|218484052|gb|FG943456.1|FG943456
genomic: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
EST: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAG GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGTEST: gi|58597523|gb|CK008051.1|CK008051
genomic: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
EST: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAAGTGCTTAAAG GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGTEST: gi|29616879|gb|CB621891.1|CB621891
genomic: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
EST: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAG GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGTEST: gi|117246981|gb|CT843770.1|CT843770
genomic: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
EST: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAG GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGTEST: gi|58677217|gb|CK065904.1|CK065904
genomic: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
EST: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAG GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGTEST: gi|33676606|gb|CF304845.1|CF304845
genomic: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
EST: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAG GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGTEST: gi|29679525|gb|CB675800.1|CB675800
genomic: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
EST: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAG GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGTEST: gi|33677524|gb|CF305763.1|CF305763
genomic: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
EST: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAG GCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
genomic: TGGAGTACATCAACAAAATTGTGCTTGTTTTTTCTCCAAACTGCTTAAAGgtatatttca ... gatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGT
atatttcatctaattttgtctcagtaagctgcagtactaaagattgatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGTGTTATCTCAGAAACAGGATTTATTCTGAAGGAAGATGAAGATAACCTGG
tttttc CT-rich tract
taaagattgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatttcagaggatagtaggaatcatggacagctaaatatttcatctaattttgtctcagtaagctgcagtactaaagattgatttttcagGCGAAGCTTCTCAAGGCTAAAGCATTGCTAGCACTTGAAGACTACTCAAGTGTTATCTCAGAAACAGGATTTATTCTGAAGGAAGATGAAGATAACCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA