Sequence
atgc intronic sequence ATGC exonic sequence...ttaaagtcagttacctctgtggtgccctgtggaatgagctgtttaaacaaactagtattattgagttctatcctctctgatctgtagtttcctcatgcagATGTGTGATATGTTGTTTTCTCAATTATGTCTGAGACTGCCATCTTCAAATGTGATGCATATGGGTGGGCTTCAATCCCTTGGTCAACTTTTTGGTTGTA
Basic information
| species | Oryza sativa |
| transcript | LOC_Os01g74310.5 |
| intron # | 3 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g74310.5 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G459642_T04 (Zea mays), 3'ss of exon 1
ttaaagtcagtt-acctctgtggtgcc-ctgtggaatgagctgtttaaac--aaactagtattattgagttctatcctctctgatctgtagtttcctcatgcagATGTGTGATATGTTGTTTTCTCAATTATGTCTGAGACTGCCATCTTCAAATGTGATGCATATGGGTGGGCTTCAATCCCTTGGTCAACTTTTTGGTTGTA
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---agatcagtttattactctggacttactacatattgaggtactgaaatttacactaatgtc-ctaaaattgattattttttatttgcatcttcccgtttcagATGTGTGACATGCTGTTCTCTCAATTATGCCTGAGAATTCCATCCACAAATGCGATGCAAGTTAGGGGTCTTCAGTCCCTTGGTCAACTTTTTGGTTATAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29640959|gb|CB645966.1|CB645966EST: TGTTGCTTGTGGTCCAAAATAATGAGACAGACCATATTAACATCTTAAAG ATGTGTGATATGTTGTTTTCTCAATTATGTCTGAGACTGCCATCTTCAAAT
genomic: TGTTGCTTGTGGTCCAAAATAATGAGACAGACCATATTAACATCTTAAAGgtgattactt ... cctcatgcagATGTGTGATATGTTGTTTTCTCAATTATGTCTGAGACTGCCATCTTCAAAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacaaactagtattattgagttctatcctctctgatctgtagtttcctcatgcagATGTGTGATATGTTGTTTTCTCAATTATGTCTGAGACTGCCATCTTCAAATGTGATGCATATGGGTGGGCTTCAATCCCTTGGTCAACTTTTTGGTTGTA
ctctgat putative branch site (score: 4)
tttcctcat putative PPT
tagtattatt TA-rich tract
