1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attatggcaatggtacatttgggagtcatatcttttcttgttatataactccattttgttcattccactgttatcatactgtaccttcttaattctacagAGAAATCCATGCTGAAGTTTGGCAGTATGTTTTCAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTT
species | Oryza sativa |
transcript | LOC_Os01g74010.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAG AGAAATCCATGCTGAAGTTTGGCAGTATGTTTTCAGTGATTGGTCATCTCTEST: gi|88983074|gb|CI020638.1|CI020638
genomic: TTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGgtaaactgta ... aattctacagAGAAATCCATGCTGAAGTTTGGCAGTATGTTTTCAGTGATTGGTCATCTCT
EST: TTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAG AGAAATCCATGCTGAAGTTTGGCAGTATGTTTTCAGTGATTGGTCATCTCTEST: gi|88966132|gb|CI013008.1|CI013008
genomic: TTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGgtaaactgta ... aattctacagAGAAATCCATGCTGAAGTTTGGCAGTATGTTTTCAGTGATTGGTCATCTCT
EST: TTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAG AGAAATCCATGCTGAAGTTTGGCAGTATGTTTTCAGTGATTGGTCATCTCTEST: gi|86595529|gb|CI264626.1|CI264626
genomic: TTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGgtaaactgta ... aattctacagAGAAATCCATGCTGAAGTTTGGCAGTATGTTTTCAGTGATTGGTCATCTCT
EST: TTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAG AGAAATCCATGCTGAAGTTTGGCAGTATGTTTTCAGTGATTGGTCATCTCTEST: gi|86542295|gb|CI182501.1|CI182501
genomic: TTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGgtaaactgta ... aattctacagAGAAATCCATGCTGAAGTTTGGCAGTATGTTTTCAGTGATTGGTCATCTCT
EST: TTTTGTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAG AGAAATCCATGCTGAAGTTTGGCAGTATGTTTTCAGTGATTGGTCATCTCT
genomic: TTTTTTCAATCAGAGAAGAAGCTCAGAGGATCCAGAGATTGCAAGATAAGgtaaactgta ... aattctacagAGAAATCCATGCTGAAGTTTGGCAGTATGTTTTCAGTGATTGGTCATCTCT
taactccattttgttcattccactgttatcatactgtaccttcttaattctacagAGAAATCCATGCTGAAGTTTGGCAGTATGTTTTCAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTT
tcttaat putative branch site (score: 3)
ccttctta CT-rich tract
ttcttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attatggcaatggtacatttgggagtcatatcttttcttgttatataactccattttgttcattccactgttatcatactgtaccttcttaattctacagAGAAATCCATGCTGAAGTTTGGCAGTATGTTTTCAGTGATTGGTCATCTCTTAAGGCTTCATCCCAATATTACACGTCCTTGATTCTCAAGAATACACTT
- - - - - - - acatttg
- - - - - - - - - - - - - - - - -tttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgtacc