1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtatggacatggcttatcaatacactgcactgatgtaagtttcctttgaagagttttaacatgctgctctttgcatatgttgcagCTTCACTTCCCATCTAGTATTGTTTCGTACATAGAAGACAAGAACTCAGCATTGACAGCTCAAGCGATACTAAATCATGCTTGGACAGCTGCTAGGAATG
species | Oryza sativa |
transcript | LOC_Os01g73970.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTTAGGTTTCTTTATTGGAATTTCGTTCCCAGCAGTTAGCATAACAAAG CTTCACTTCCCATCTAGTATTGTTTCGTACATAGAAGACAAGAACTCAGCAEST: gi|29641984|gb|CB646991.1|CB646991
genomic: TGTTAGGTTTCTTTATTGGAATTTCGTTCCCAGCAGTTAGCATAACAAAGgtatggacat ... tatgttgcagCTTCACTTCCCATCTAGTATTGTTTCGTACATAGAAGACAAGAACTCAGCA
EST: TGTTAGGTTTCTTTATTGGAATTTCGTTCCCAGCAGTTAGCATAACAAAG CTTCACTTCCCATCTAGTATTGTTTCGTACATAGAAGACAAGAACTCAGCAEST: gi|29663567|gb|CB659842.1|CB659842
genomic: TGTTAGGTTTCTTTATTGGAATTTCGTTCCCAGCAGTTAGCATAACAAAGgtatggacat ... tatgttgcagCTTCACTTCCCATCTAGTATTGTTTCGTACATAGAAGACAAGAACTCAGCA
EST: TGTTAGGTTTCTTTATTGGAATTTCGTTCCCAGCAGTTAGCATAACAAAG CTTCACTTCCCATCTAGTATTGTTTCGTACATAGAAGACAAGAACTCAGCAEST: gi|29656275|gb|CB652550.1|CB652550
genomic: TGTTAGGTTTCTTTATTGGAATTTCGTTCCCAGCAGTTAGCATAACAAAGgtatggacat ... tatgttgcagCTTCACTTCCCATCTAGTATTGTTTCGTACATAGAAGACAAGAACTCAGCA
EST: TGTTAGGTTTCTTTATTGGAATTTCGTTCCCAGCAGTTAGCATAACAAAG CTTCACTTCCCATCTAGTATTGTTTCGTACATAGAAGACAAGAACTCAGCA
genomic: TGTTAGGTTTCTTTATTGGAATTTCGTTCCCAGCAGTTAGCATAACAAAGgtatggacat ... tatgttgcagCTTCACTTCCCATCTAGTATTGTTTCGTACATAGAAGACAAGAACTCAGCA
tgatgtaagtttcctttgaagagttttaacatgctgctctttgcatatgttgcagCTTCACTTCCCATCTAGTATTGTTTCGTACATAGAAGACAAGAACTCAGCATTGACAGCTCAAGCGATACTAAATCATGCTTGGACAGCTGCTAGGAATG
ttttaac putative branch site (score: 29)
ttttaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggacatggcttatcaatacactgcactgatgtaagtttcctttgaagagttttaacatgctgctctttgcatatgttgcagCTTCACTTCCCATCTAGTATTGTTTCGTACATAGAAGACAAGAACTCAGCATTGACAGCTCAAGCGATACTAAATCATGCTTGGACAGCTGCTAGGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT