1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgtgtatcataaaattgaacaaaccaataacattttgtacagcgctttgcattcttctgggattaaaaacgctttttatcttgagacagTGGATGGAAGACTATGTCCTGAATAAACTGCCATCTTCTAAG
species | Oryza sativa |
transcript | LOC_Os01g73670.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGAATTGCAATATCTCGACTTCTGCAAGGCATTGTCGAAGGAACTTAAG TGGATGGAAGACTATGTCCTGAATAAACTGCCATCTTCTAAGEST: gi|27577720|gb|CB000415.1|CB000415
genomic: CTGAATTGCAATATCTCGACTTCTGCAAGGCATTGTCGAAGGAACTTAAGgtgtgtatca ... cttgagacagTGGATGGAAGACTATGTCCTGAATAAACTGCCATCTTCTAAG
EST: CTGAATTGCAATATCTCGACTTCTGCAAGGCATTGTCGAAGGAACTTAAG TGGATGGAAGACTATGTCCTGAATAAACTGCCATCTTCTAAG
genomic: CTGAATTGCAATATCTCGACTTCTGCAAGGCATTGTCGAAGGAACTTAAGgtgtgtatca ... cttgagacagTGGATGGAAGACTATGTCCTGAATAAACTGCCATCTTCTAAG
ttgtacagcgctttgcattcttctgggattaaaaacgctttttatcttgagacagTGGATGGAAGACTATGTCCTGAATAAACTGCCATCTTCTAAG
ctttttatctt CT-rich tract
tttttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtatcataaaattgaacaaaccaataacattttgtacagcgctttgcattcttctgggattaaaaacgctttttatcttgagacagTGGATGGAAGACTATGTCCTGAATAAACTGCCATCTTCTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA