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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taggaagtaccatttccagccttgtctgactacatgtaaaaactctatagagcttgggttttcatatttcttttatataaataaaatcttgcttctgcagGTGTTACGTACTGCCGTTGGCCACAGATTAGCAAAAGTTCAGGGCTATCTATTCAGGGTTGCATTTCTTCGGCGTGTTCCAACCTTTACACGCCTGATTA

Basic information

species Oryza sativa
transcript LOC_Os01g73530.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g73530.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G375807_T01 (Zea mays), 3'ss of exon 2
--tagga-agtaccatttccagccttgtctgactacatgtaaaaactctatagagcttgggttttcatatttcttttatataaataaaatcttgcttctgcagGTGTTACGTACTGCCGTTGGCCACAGATTAGCAAAAGTTCAGGGCTATCTATTCAGGGTTGCATTTCTTCGGCGTGTTCCAACCTTTACACGCCTGATTA
   ||   || | ||| |  ||||  |   ||||   |     |  | |    | ||    || | |            ||   |       |  |||||||||| || ||||| || |||||||||||||| |||||||| || || ||| |||||||   |||||| ||||||||| |||| ||||||||||| || ||||
agcagtctagcaacatgtaaagccaag---gactttgttattcatatttgcctacctatcattctaaagcagtaggatgatgtgtccttctatctttctgcagGTCTTGCGTACAGCTGTTGGCCACAGATTGGCAAAAGTACAAGGATATTTATTCAGATCTGCATTCCTTCGGCGTATTCCGACCTTTACACGTCTCATTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatagagcttgggttttcatatttcttttatataaataaaatcttgcttctgcagGTGTTACGTACTGCCGTTGGCCACAGATTAGCAAAAGTTCAGGGCTATCTATTCAGGGTTGCATTTCTTCGGCGTGTTCCAACCTTTACACGCCTGATTA
                                         tcttgcttct  CT-rich tract
             ttttcatatttctttt  TA-rich tract