1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atattgtctccttttgataagggtgatgggtcaccttcacttttttttgtaaccttttctcttctaagacttacattgaaagtttttacatgctgtgcagGTTGAAGCAAGAGAGCAACGACTGAGATTTGTGGAGTCCAATCCATTAAATTCTTACTCTTCTAATGAG
species | Oryza sativa |
transcript | LOC_Os01g72860.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGGGCACTCTGACATTAGTTTGGCAGATTCATACGCTAAAGATAATAAG GTTGAAGCAAGAGAGCAACGACTGAGATTTGTGGAGTCCAATCCATTAAATEST: gi|29627766|gb|CB632777.1|CB632777
genomic: ATGGGCACTCTGACATTAGTTTGGCAGATTCATACGCTAAAGATAATAAGgtgtttacca ... tgctgtgcagGTTGAAGCAAGAGAGCAACGACTGAGATTTGTGGAGTCCAATCCATTAAAT
EST: ATGGGCACTCTGACATTAGTTTGGCAGATTCATACGCTAAAGATAATAAG GTTGAAGCAAGAGAGCAACGACTGAGATTTGTGGAGTCCAATCCATTAAAT
genomic: ATGGGCACTCTGACATTAGTTTGGCAGATTCATACGCTAAAGATAATAAGgtgtttacca ... tgctgtgcagGTTGAAGCAAGAGAGCAACGACTGAGATTTGTGGAGTCCAATCCATTAAAT
tttgtaaccttttctcttctaagacttacattgaaagtttttacatgctgtgcagGTTGAAGCAAGAGAGCAACGACTGAGATTTGTGGAGTCCAATCCATTAAATTCTTACTCTTCTAATGAG
gacttac putative branch site (score: 32)
attgaaagttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattgtctccttttgataagggtgatgggtcaccttcacttttttttgtaaccttttctcttctaagacttacattgaaagtttttacatgctgtgcagGTTGAAGCAAGAGAGCAACGACTGAGATTTGTGGAGTCCAATCCATTAAATTCTTACTCTTCTAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - -ggtgatg
- - - - - - - - - - - - - - - - -ccttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttacat