1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aatcggactgagtgacaaatagagggactcaatgtgaacttattccgtacagaaaagcctaacagtgggctgacgctatatggatctcttgatgacatagTGGGCCGCTACCACGAGCGTGGACTTCGCGTTGGCGCAGTTGGTCCAGGTGATCGTCTTGCTCAGCACCGGTGGAGCCAACGGCGGTGGCTACATGGCCT
species | Oryza sativa |
transcript | LOC_Os01g71720.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGCTGGTTTAACATCACGGGACAG TGGGCCGCTACCACGAGCGTGGACTTCGCGTTGGCGCAGTTGGTCCAGGTGEST: gi|66923657|gb|CX110505.1|CX110505
genomic: TGGCTGGTTTAACATCACGGGACAGgtaggtacat ... gatgacatagTGGGCCGCTACCACGAGCGTGGACTTCGCGTTGGCGCAGTTGGTCCAGGTG
EST: TGGCTGGTTTAACATCACGGGACAG TGGGCCGCTACCACGAGCGTGGACTTCGCGTTGGCGCAGTTGGTCCAGGTGEST: gi|88421312|gb|CI569157.1|CI569157
genomic: TGGCTGGTTTAACATCACGGGACAGgtaggtacat ... gatgacatagTGGGCCGCTACCACGAGCGTGGACTTCGCGTTGGCGCAGTTGGTCCAGGTG
EST: TGGCTGGTTTAACATCACGGGACAG TGGGCCGTTAC-ACGAGCGTGGACTTCGCGTTGGCGCAGTTGGTC-AGGTG
genomic: TGGCTGGTTTAACATCACGGGACAGgtaggtacat ... gatgacatagTGGGCCGCTACCACGAGCGTGGACTTCGCGTTGGCGCAGTTGGTCCAGGTG
cgtacagaaaagcctaacagtgggctgacgctatatggatctcttgatgacatagTGGGCCGCTACCACGAGCGTGGACTTCGCGTTGGCGCAGTTGGTCCAGGTGATCGTCTTGCTCAGCACCGGTGGAGCCAACGGCGGTGGCTACATGGCCT
tctcttg CT-rich tract
tatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcggactgagtgacaaatagagggactcaatgtgaacttattccgtacagaaaagcctaacagtgggctgacgctatatggatctcttgatgacatagTGGGCCGCTACCACGAGCGTGGACTTCGCGTTGGCGCAGTTGGTCCAGGTGATCGTCTTGCTCAGCACCGGTGGAGCCAACGGCGGTGGCTACATGGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - -ctgagtg
- - - - - - - acaaata
- - - - - - - - - - - - - - -caatgtg
- - - - - - - - - - - - - - - - - - - - - - - - -cagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgacg