1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcagaaacttgtatcaattttgcacatactcaaaattcaagcttctgcaactcaaaattaatgttgtgtaattattctacagGATTCCAGAGATAATCTTTTGGCATATTCCAAGTACGGCATATGCCAAGGTTGCGCCGAAAGCTAAGTCCGAAATAAGAAAACCCTGTGTTGGCTCTATC
species | Oryza sativa |
transcript | LOC_Os01g71420.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGGTTCAGTGGTTTCATAGTCAATCTCAGTTCCTTAATCCAAATGGAAG GATTCCAGAGATAATCTTTTGGCATATTCCAAGTACGGCATATGCCAAGGTEST: gi|86494914|gb|CI137547.1|CI137547
genomic: CAGGTTCAGTGGTTTCATAGTCAATCTCAGTTCCTTAATCCAAATGGAAGgtcagaaact ... tattctacagGATTCCAGAGATAATCTTTTGGCATATTCCAAGTACGGCATATGCCAAGGT
EST: CAGGTTCAGTGGTTTCATAGTCAATCTCAGTTCCTTAATCCCAATGGAAG GATTCCAGAGATAATCTTTTGGCATATTCCAAGTACGGCATATGCCAAGGTEST: gi|15851504|gb|BI799780.1|BI799780
genomic: CAGGTTCAGTGGTTTCATAGTCAATCTCAGTTCCTTAATCCAAATGGAAGgtcagaaact ... tattctacagGATTCCAGAGATAATCTTTTGGCATATTCCAAGTACGGCATATGCCAAGGT
EST: TAATCCAAATGGAAG GATTCCAGAGATAATCTTTTGGCATATTCCAAGTACGGCATATGCCAAGGT
genomic: TAATCCAAATGGAAGgtcagaaact ... tattctacagGATTCCAGAGATAATCTTTTGGCATATTCCAAGTACGGCATATGCCAAGGT
actcaaaattcaagcttctgcaactcaaaattaatgttgtgtaattattctacagGATTCCAGAGATAATCTTTTGGCATATTCCAAGTACGGCATATGCCAAGGTTGCGCCGAAAGCTAAGTCCGAAATAAGAAAACCCTGTGTTGGCTCTATC
aattaat putative branch site (score: 4)
ttattct putative PPT
aaaattaatgttgtgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagaaacttgtatcaattttgcacatactcaaaattcaagcttctgcaactcaaaattaatgttgtgtaattattctacagGATTCCAGAGATAATCTTTTGGCATATTCCAAGTACGGCATATGCCAAGGTTGCGCCGAAAGCTAAGTCCGAAATAAGAAAACCCTGTGTTGGCTCTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA