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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgcatcaggattgaacattcgttgttgcttgttggaattccttactacaggtttgatcttatataccttccgtgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCTGGAGTGCTACAATTTCCTAAAACCATCATCGGATCAACCACAGTAGCAG

Basic information

species Oryza sativa
transcript LOC_Os01g70780.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86523863|gb|CI164069.1|CI164069
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88523572|gb|CI451409.1|CI451409
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|86482295|gb|CI124928.1|CI124928
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88520696|gb|CI448350.1|CI448350
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|89164417|gb|CI101505.1|CI101505
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|89162117|gb|CI103653.1|CI103653
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|86511531|gb|CI154164.1|CI154164
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88484893|gb|CI422164.1|CI422164
EST:     TGTTGGGCATGGATGGAAG                         CTTGTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: TGTT-GGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|58592896|gb|CF991204.1|CF991204
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCC
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCC
EST: gi|86494779|gb|CI137412.1|CI137412
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|89196171|gb|CI397173.1|CI397173
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88537901|gb|CI466886.1|CI466886
EST:     GCATTTGGCCATGAGAAGAATACCNTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88561007|gb|CI491720.1|CI491720
EST:     GCATNGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTTTAAACGGAGGAGAGATGCTNCAGCT
genomic: GCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88957284|gb|CI095261.1|CI095261
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88249808|gb|CI249657.1|CI249657
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|86858814|gb|CI275062.1|CI275062
EST:     GCATTTGNCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88521942|gb|CI449664.1|CI449664
EST:     GCATTTGGCCATGAGAAGAATACCNTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|29640442|gb|CB645451.1|CB645451
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88554061|gb|CI484216.1|CI484216
EST:     GCATTTGGCCATGAGAAGAATACCNTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88284685|gb|CI406131.1|CI406131
EST:     CAGTTTGGCCATTAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: CA-TTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|86257293|gb|CI004111.1|CI004111
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|58655272|gb|CK043952.1|CK043952
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|86535647|gb|CI175853.1|CI175853
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAGACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88519253|gb|CI446907.1|CI446907
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88260887|gb|CI361475.1|CI361475
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|86505908|gb|CI148541.1|CI148541
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88385134|gb|CI561790.1|CI561790
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTGGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|58597872|gb|CK008400.1|CK008400
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|86504653|gb|CI147286.1|CI147286
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGTATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88215476|gb|CI215325.1|CI215325
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88222164|gb|CI222120.1|CI222120
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|86434800|gb|CI106033.1|CI106033
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88227721|gb|CI227201.1|CI227201
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88531870|gb|CI458388.1|CI458388
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCT-TAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88540033|gb|CI470041.1|CI470041
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88980871|gb|CI022560.1|CI022560
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88420627|gb|CI562261.1|CI562261
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88548143|gb|CI477060.1|CI477060
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88538764|gb|CI467822.1|CI467822
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88964138|gb|CI045331.1|CI045331
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88557368|gb|CI487766.1|CI487766
EST:     CATTTGGCCATGAGAAGAATACCTG-GGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: CATTTGGCCATGAGAAGAATACC-GTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|86495008|gb|CI137641.1|CI137641
EST:     GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
EST: gi|88522210|gb|CI449953.1|CI449953
EST:     GCATTTGGCCATGAGAAGAATACCNTGGCAGTTGTTGGCATGGATGGAAG                         CTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT
genomic: GCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 75 (downstream exon)
Score: 21

AGTGGTCTGTAGCTCAGTTCAGACTCCACGAGGGGGAGCAATATATTGTTGCATTTGGCCATGAGAAGAATACCGTGGCAGTTGTTGGCATGGATGGAAGgtatgtgcat ... tgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCTGGAGTGCTACAATTTCCTAAAACCATCATCGGATCAACCACAGTAGCAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgttggaattccttactacaggtttgatcttatataccttccgtgtgttacagCTTCTACCGATGCCAGTTCGACCCTGTAAACGGAGGAGAGATGCTGCAGCTGGAGTGCTACAATTTCCTAAAACCATCATCGGATCAACCACAGTAGCAG
                                      ccttccgt  CT-rich tract
                        tttgatcttatata  TA-rich tract