1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctgatgcaatctgcttcaagaattaatatgtaacctcctaattctgatgagcttgacattgttctttgccatctaataacacgctgttcttctgttgcagGGTGCCGAAATAGTTGATGAATCACATGATCAGGACACCACTGACCTGCATAAATGTGTATCATTTATCACCAGAAATCCACCTGGCTCTGAAGAGTCTA
species | Oryza sativa |
transcript | LOC_Os01g70580.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
gatgagcttgacattgttctttgccatctaataacacgctgttcttctgttgcagGGTGCCGAAATAGTTGATGAATCACATGATCAGGACACCACTGACCTGCATAAATGTGTATCATTTATCACCAGAAATCCACCTGGCTCTGAAGAGTCTA
taataac putative branch site (score: 4)
ctgttcttct putative PPT
atctaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgatgcaatctgcttcaagaattaatatgtaacctcctaattctgatgagcttgacattgttctttgccatctaataacacgctgttcttctgttgcagGGTGCCGAAATAGTTGATGAATCACATGATCAGGACACCACTGACCTGCATAAATGTGTATCATTTATCACCAGAAATCCACCTGGCTCTGAAGAGTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
-tgatgca
- - - - - ctgcttc
- - - - - - - - - - - - -atatgta
- - - - - - - - - - - - - - - - - - - - - -ctgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgctgtt