1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctcttttacaactgttaaagaaaaaaaaattgtggtactttcctgcatagtttatttccacatttccatcattgagttgaaatggttgataatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG
species | Oryza sativa |
transcript | LOC_Os01g68710.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|55436956|gb|CV731667.1|CV731667
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: TCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|55440369|gb|CV733494.1|CV733494
genomic: TCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|88723491|gb|CI747001.1|CI747001
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|55409944|gb|CV722320.1|CV722320
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|55438455|gb|CV732524.1|CV732524
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: AAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|88723609|gb|CI747119.1|CI747119
genomic: AAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|88722134|gb|CI745461.1|CI745461
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|568861|gb|D39710.1|D39710
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|33659572|gb|CF282185.1|CF282185
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|8527930|gb|AU092745.1|AU092745
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCNTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|163923518|gb|EG711137.1|EG711137
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|88344739|gb|CI624390.1|CI624390
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGAAAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|88723542|gb|CI747052.1|CI747052
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|86829242|gb|CI284927.1|CI284927
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|55436954|gb|CV731666.1|CV731666
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|58589883|gb|CF988191.1|CF988191
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAEST: gi|11171677|gb|AU163906.1|AU163906
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACA
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|55433322|gb|CV729734.1|CV729734
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|88726773|gb|CI750428.1|CI750428
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|55413431|gb|CV725807.1|CV725807
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|2442348|gb|C74119.1|C74119
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|55433324|gb|CV729735.1|CV729735
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: AAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|55414253|gb|CV726629.1|CV726629
genomic: AAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|55412950|gb|CV725326.1|CV725326
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|88827090|gb|CI777655.1|CI777655
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|9055415|gb|AU097613.1|AU097613
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: AAATCCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|2442460|gb|C74231.1|C74231
genomic: AAAT-CAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAEST: gi|86829393|gb|CI285036.1|CI285036
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACT-GATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGA
EST: TCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|27547036|gb|CA765286.2|CA765286
genomic: TCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCANGTGTTTGATTCTAGCTATGACAGAGGTGAEST: gi|55441436|gb|CV734038.1|CV734038
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCA-GTGTTTGATTCTAGCTATGACAGAGGTGA
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|88207641|gb|CI207490.1|CI207490
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: TGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|33685240|gb|CF313479.1|CF313479
genomic: TGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|55413109|gb|CV725485.1|CV725485
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|51946051|gb|CV152392.1|CV152392
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|163928575|gb|EG711160.1|EG711160
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGTATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|88242499|gb|CI242348.1|CI242348
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: AAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACEST: gi|428562|gb|D24714.1|D24714
genomic: AAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
EST: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGT GGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
genomic: CATGCACCCTGCAAGCTCACAAAGGAGACAAAATCAAAGTGCATTATCGTgtaagtattc ... aatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGAC
catagtttatttccacatttccatcattgagttgaaatggttgataatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG
ggttgat putative branch site (score: 45)
tttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcttttacaactgttaaagaaaaaaaaattgtggtactttcctgcatagtttatttccacatttccatcattgagttgaaatggttgataatgctgcagGGGTCACTCACTGATGGATCAGTGTTTGATTCTAGCTATGACAGAGGTGACCCCTTTGAATTTACTCTTGGAAACGGCCAAGTGATAAAAG
- - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - tggtact
- - - - - - - - - - - - - - - - - - - - tcctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggttg