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gtatgccccttcagattcagatttgtgactttctctattttgattgtaattttaagatacacgtgcggtgtagtatagtacctgagatccctttttgcttgttagacctcactacaaaatagagatcctgaattctaattctgttaggtagATGGAAATTGCACGGCAACGGGAATTAGAAGGCCAAGGGAGTGAGAATGCAGGGAGTATATATAATGGGTTACTTCATAGATCAGAGGTTACACAAGAAG
species | Oryza sativa |
transcript | LOC_Os01g68010.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCT ATGGAAATTGCACGGCAACGGGAATTAGAAGGCCAEST: gi|88339196|gb|CI633767.1|CI633767
genomic: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCTgtatgcccct ... tgttaggtagATGGAAATTGCACGGCAACGGGAATTAGAAGGCCA
EST: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCT ATGGAAATTGCACGGCAACGGGAATTAGAAGGCCAAGGGAGTGAGAATGGAEST: gi|38565749|gb|CK085202.1|CK085202
genomic: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCTgtatgcccct ... tgttaggtagATGGAAATTGCACGGCAACGGGAATTAGAAGGCCAAGGGAGTGAGAATGCA
EST: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCT ATGGAAATTGCACGGCAACGGGAATTAGAAGGCCAAGGGAGTGAGAATGCAEST: gi|88742952|gb|CI766460.1|CI766460
genomic: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCTgtatgcccct ... tgttaggtagATGGAAATTGCACGGCAACGGGAATTAGAAGGCCAAGGGAGTGAGAATGCA
EST: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCT GEST: gi|88742952|gb|CI766460.1|CI766460
genomic: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCTgtatgcccct ... tgttaggtag-
EST: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCT GEST: gi|88742952|gb|CI766460.1|CI766460
genomic: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCTgtatgcccct ... tgttaggtag-
EST: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCT GEST: gi|88370350|gb|CI587740.1|CI587740
genomic: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCTgtatgcccct ... tgttaggtag-
EST: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCT ATGGAAATTGCACGGCAACGGGAATTAGAAGGCCAAGGGAGTGAGAATGCAEST: gi|88341320|gb|CI640077.1|CI640077
genomic: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCTgtatgcccct ... tgttaggtagATGGAAATTGCACGGCAACGGGAATTAGAAGGCCAAGGGAGTGAGAATGCA
EST: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCT ATGGAAATTGCACGGCAACGGGAATTAGAAGGCCAAGGGAGTGAGAATGCAEST: gi|9866162|gb|AU101912.1|AU101912
genomic: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCTgtatgcccct ... tgttaggtagATGGAAATTGCACGGCAACGGGAATTAGAAGGCCAAGGGAGTGAGAATGCA
EST: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCT ATGGAAATTGCACGGCAACGGGAATTAGAAGGCCAAGGGAGTGAGAATGCAEST: gi|88364426|gb|CI644504.1|CI644504
genomic: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCTgtatgcccct ... tgttaggtagATGGAAATTGCACGGCAACGGGAATTAGAAGGCCAAGGGAGTGAGAATGCA
EST: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCT ATGGAAATTGCACGGCAACGGGAATTAGAAGGCCAAGGGAGTGAGAATGCAEST: gi|88737467|gb|CI759348.1|CI759348
genomic: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCTgtatgcccct ... tgttaggtagATGGAAATTGCACGGCAACGGGAATTAGAAGGCCAAGGGAGTGAGAATGCA
EST: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCT GEST: gi|88737467|gb|CI759348.1|CI759348
genomic: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCTgtatgcccct ... tgttaggtag-
EST: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCT GEST: gi|88737467|gb|CI759348.1|CI759348
genomic: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCTgtatgcccct ... tgttaggtag-
EST: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCT GEST: gi|58652950|gb|CK041630.1|CK041630
genomic: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCTgtatgcccct ... tgttaggtag-
EST: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCT ATGGAAATTGCACGGCAACGGGAATTAGAAGGCCAAGGGAGTGAGAATGCA
genomic: AGAAGAGATCACAGTACGCAGCCTTTAAAGAAGAATTCCTTAGCAACCCTgtatgcccct ... tgttaggtagATGGAAATTGCACGGCAACGGGAATTAGAAGGCCAAGGGAGTGAGAATGCA
gcttgttagacctcactacaaaatagagatcctgaattctaattctgttaggtagATGGAAATTGCACGGCAACGGGAATTAGAAGGCCAAGGGAGTGAGAATGCAGGGAGTATATATAATGGGTTACTTCATAGATCAGAGGTTACACAAGAAG
ttctaat putative branch site (score: 4)
ttctgtt CT-rich tract
aattctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgccccttcagattcagatttgtgactttctctattttgattgtaattttaagatacacgtgcggtgtagtatagtacctgagatccctttttgcttgttagacctcactacaaaatagagatcctgaattctaattctgttaggtagATGGAAATTGCACGGCAACGGGAATTAGAAGGCCAAGGGAGTGAGAATGCAGGGAGTATATATAATGGGTTACTTCATAGATCAGAGGTTACACAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG