Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcctttttgttctttgtatcatgatatttatgcatttcctcgtaaattctggttattatactatatatttgttattatcatactgtatgccttaatagtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGATATCGTGATGGCTGCTGCCTACTCCCATGAGCTGCCTCGCTATGGTCTTG

Basic information

species Oryza sativa
transcript LOC_Os01g67134.1
intron # 3
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g67134.1 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv00s0174g00190.t01 (Vitis vinifera), 3'ss of exon 4
gtatcctttttgttctttgtatcatgatatttatgcatttcctcgtaaattctggttattatactatatatttgttattatcatactgtatgccttaatagtacatt-agACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGATATCGTGATGGCTGCTGCCTACTCCCATGAGCTGCCTCGCTATGGTCTTG
      ||||| ||     |||  |   |  | |   |||    ||||||   |   || ||||| |   ||  || |  || |  ||||  |||||| | ||   | |||| ||||| ||||| || ||||||||| | | |||||  |||||||||||||| ||  | || || ||||| |||||||| ||||||| |||||| ||||
-----atttttatttgacatatagttgaaggtcttattttgggggtaaat--agacaatcatactgt---ttctttttcctctttttgtaaaccttaacactattctcagACGAACAAGGATATAACTGCTCAAATTATATCTGCTAGTATTGCTGGTGATATGGTTCTTGCAGCGGCCTATTCCCATGAACTGCCTCACTATGGGCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58658098|gb|CK046778.1|CK046778
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88718553|gb|CI742063.1|CI742063
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88315543|gb|CI615415.1|CI615415
EST:     AAGATAAGAACAAGTACAACACAACGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|218502752|gb|FG953444.1|FG953444
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTTGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCGGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|58604817|gb|CK015345.1|CK015345
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|33689831|gb|CF318070.1|CF318070
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|11863316|gb|AU065822.2|AU065822
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|44667460|gb|CR280894.1|CR280894
EST:     AACACACCGAAGTACCGCTTCGTTGTGAGA-TT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88406602|gb|CI599095.1|CI599095
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|33799084|gb|CF325402.1|CF325402
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88388750|gb|CI592638.1|CI592638
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88731096|gb|CI754709.1|CI754709
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|33654169|gb|CF276783.1|CF276783
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88316468|gb|CI621707.1|CI621707
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88362740|gb|CI608889.1|CI608889
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|29657555|gb|CB653830.1|CB653830
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88352341|gb|CI615595.1|CI615595
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88317346|gb|CI627995.1|CI627995
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88726027|gb|CI749682.1|CI749682
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|33820922|gb|CF336266.1|CF336266
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|33693282|gb|CF321521.1|CF321521
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAACTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88718895|gb|CI742405.1|CI742405
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88760193|gb|CI769749.1|CI769749
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88762360|gb|CI771916.1|CI771916
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|11026266|gb|AU162867.1|AU162867
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|55409447|gb|CV721823.1|CV721823
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|58597352|gb|CK007880.1|CK007880
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTTGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCGGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|11565253|gb|AU165889.1|AU165889
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|33689690|gb|CF317929.1|CF317929
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|58686254|gb|CK074941.1|CK074941
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88716726|gb|CI740236.1|CI740236
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|29687293|gb|CB683568.1|CB683568
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|33664208|gb|CF295175.1|CF295175
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|86831851|gb|CI303291.1|CI303291
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88693462|gb|CI737037.1|CI737037
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|32948464|gb|BP185036.1|BP185036
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|33690075|gb|CF318314.1|CF318314
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|9884543|gb|BE607376.1|BE607376
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTTGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCGGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|33823119|gb|CF337362.1|CF337362
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88726436|gb|CI750091.1|CI750091
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|32948110|gb|BP184682.1|BP184682
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|117251436|gb|CT844165.1|CT844165
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|33810868|gb|CF331325.1|CF331325
EST:     AAGATAAGAACAAGTACAACACACCGATGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|86905628|gb|CI287193.1|CI287193
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88356667|gb|CI617750.1|CI617750
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|33688829|gb|CF317068.1|CF317068
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|86830607|gb|CI292049.1|CI292049
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|86596791|gb|CI286704.1|CI286704
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88761552|gb|CI771108.1|CI771108
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|58602021|gb|CK012549.1|CK012549
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|58599223|gb|CK009751.1|CK009751
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88745455|gb|CI768815.1|CI768815
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|33823697|gb|CF337654.1|CF337654
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|33690461|gb|CF318700.1|CF318700
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATCGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|163917751|gb|EG711285.1|EG711285
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88385545|gb|CI564205.1|CI564205
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88393713|gb|CI621208.1|CI621208
EST:     AAGATAAGAACAAGTACAACACACCGAAGTAC-GCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|58591763|gb|CF990071.1|CF990071
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88731290|gb|CI754903.1|CI754903
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|58593862|gb|CF992170.1|CF992170
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGAGGG                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|12405044|gb|AU166645.1|AU166645
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCGGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|38568588|gb|CD670803.1|CD670803
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88360056|gb|CI610170.1|CI610170
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|33664336|gb|CF295303.1|CF295303
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88736162|gb|CI759670.1|CI759670
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88393147|gb|CI616631.1|CI616631
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|87023897|gb|CI288250.1|CI288250
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88736065|gb|CI759573.1|CI759573
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|4878238|gb|AU062537.1|AU062537
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88739370|gb|CI762878.1|CI762878
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88729308|gb|CI752818.1|CI752818
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|11025899|gb|AU162500.1|AU162500
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88726414|gb|CI750069.1|CI750069
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|87006113|gb|CI291309.1|CI291309
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|88734369|gb|CI757877.1|CI757877
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
EST: gi|33693846|gb|CF322085.1|CF322085
EST:     AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTT                         ACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT
genomic: AAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 648

AGGGCAAGACTGACTACAGGGCCAGGATTAGGCTCACCAACCAAGATAAGAACAAGTACAACACACCGAAGTACCGCTTCGTTGTGAGATTTgtatcctttt ... agtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGATATCGTGATGGCTGCTGCCTACTCCCATGAGCTGCCTCGCTATGGTCTTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttattatactatatatttgttattatcatactgtatgccttaatagtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGATATCGTGATGGCTGCTGCCTACTCCCATGAGCTGCCTCGCTATGGTCTTG
 tgccttaat  putative branch site 
     tatactatatatttgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatcctttttgttctttgtatcatgatatttatgcatttcctcgtaaattctggttattatactatatatttgttattatcatactgtatgccttaatagtacattagACAAACAAAGATATCACAGCTCAAATTGTCTATGCTACCATTGCTGGTGATATCGTGATGGCTGCTGCCTACTCCCATGAGCTGCCTCGCTATGGTCTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC