1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttcttagaaaactgctgtctggccactggctattttatccctagttcaggcttgcttgcactcctaagttacattttggttctactattttcttatgcagGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGAAAGAAAAGACTCCCAACAGTAGT
species | Oryza sativa |
transcript | LOC_Os01g66420.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAG GAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTEST: gi|218504195|gb|FG956553.1|FG956553
genomic: TCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGgtaatttttt ... tcttatgcagGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGT
EST: TCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAG GAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTEST: gi|2311211|gb|C27366.1|C27366
genomic: TCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGgtaatttttt ... tcttatgcagGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGT
EST: TCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAG GAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTEST: gi|33799651|gb|CF325688.1|CF325688
genomic: TCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGgtaatttttt ... tcttatgcagGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGT
EST: TCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAG GAGGCGACTCTTTAATATGATAAACAAEST: gi|38477137|gb|CF961270.1|CF961270
genomic: TCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGgtaatttttt ... tcttatgcagGAGGCGACTCTTTAATATGATAAACAA
EST: GTGGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAG GAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGT
genomic: CT-GTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGgtaatttttt ... tcttatgcagGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGT
tcaggcttgcttgcactcctaagttacattttggttctactattttcttatgcagGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGAAAGAAAAGACTCCCAACAGTAGT
ttctactattttctt CT-rich tract
tactattttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttagaaaactgctgtctggccactggctattttatccctagttcaggcttgcttgcactcctaagttacattttggttctactattttcttatgcagGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGAAAGAAAAGACTCCCAACAGTAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA