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...tttcctgttgattatattttcttcttatccttagcaacaaagtaggcattttaatctaccttgtaatataatatgagttcttgttatgctattgcttcagGATGGTGCAGGTCGTGTCGGAAAAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAG
species | Oryza sativa |
transcript | LOC_Os01g66350.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCAAAGCAAAGTAACACCAGGAGCCATTGCTATCAACTGGATCCTCAAG GATGGTGCAGGTCGTGTCGGAAAAATGCTTTTTGCACGTCAAGGAAAGAAGEST: gi|29685831|gb|CB682106.1|CB682106
genomic: CTCAAAGCAAAGTAACACCAGGAGCCATTGCTATCAACTGGATCCTCAAGgtaaataatt ... attgcttcagGATGGTGCAGGTCGTGTCGGAAAAATGCTTTTTGCACGTCAAGGAAAGAAG
EST: CTCAAAGCAAAGTAACACCAGGAGCCATTGCTATCAACTGGATCCTCAAG GATGGTGCAAGTCGTGTCAGAAAAATGCTTTTTGCACGTCAAGGAAAGAAGEST: gi|29681946|gb|CB678221.1|CB678221
genomic: CTCAAAGCAAAGTAACACCAGGAGCCATTGCTATCAACTGGATCCTCAAGgtaaataatt ... attgcttcagGATGGTGCAGGTCGTGTCGGAAAAATGCTTTTTGCACGTCAAGGAAAGAAG
EST: GTAACACCATGACCCATTGCTATCAACTGGATCCTCAAG GATGGTGCAGGTCGTGTCGGAAAAATGCTTTTTGCACGTCAAGGAAAGAAG
genomic: GTAACACCAGGAGCCATTGCTATCAACTGGATCCTCAAGgtaaataatt ... attgcttcagGATGGTGCAGGTCGTGTCGGAAAAATGCTTTTTGCACGTCAAGGAAAGAAG
gcattttaatctaccttgtaatataatatgagttcttgttatgctattgcttcagGATGGTGCAGGTCGTGTCGGAAAAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAG
ttttaat putative branch site (score: 43)
ttgcttc putative PPT
ttgtaatataatatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcctgttgattatattttcttcttatccttagcaacaaagtaggcattttaatctaccttgtaatataatatgagttcttgttatgctattgcttcagGATGGTGCAGGTCGTGTCGGAAAAATGCTTTTTGCACGTCAAGGAAAGAAGTTTGACTATGACCTAAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- -cctgttg
- - - - - - - - - - - - - - - - - caacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgct