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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgttttgtattcattaattggttatatactgtatatccatatgtataatatatatagcacgcatcgtttatatatttaatttggcctgaaattttacccgtaaataactaaatatactacatacattgtgagatttgtgtgttatcttgagccctctaaaatccagtactgggtatcttcacacagCAATACTTTCAGCAAGAAGCAGCAAAAATGCGCCACCAGATACAGACCTTGCAGAATGCAAACAG

Basic information

species Oryza sativa
transcript LOC_Os01g66290.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g66290.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G018589_T01 (Zea mays), 3'ss of exon 3
gtaagttgttttgtattcattaattggttatatactgtatatccatatgtataatatatatagcacgcatcgtttatatatttaatttggcctgaaattttacccgtaaataactaaatatactacatacattgtgagatttgtgtgttatcttgagccctctaaa-atccagtactgggtatcttcaca------cagCAATACTTTCAGCAAGAAGCAGCAAAAATGCGCCACCAGATACAGACCTTGCAGAATGCAAACAG
                                                                                               | |||||    || |||  || ||||| || ||| | | | | | ||||   |  |   || |  | | ||       | |   ||  | |   |       |||||||||||||||||||||| |||||| ||||||| |||||||| |||||||||||| |||||||
-----------------------------------------------------------------------------------------------acttttatatatatata--tatatata-tatataaagt-taaaacttgttattgcttccgatcttttttaacggatgatcccacgtcacattggaattttttagCAATACTTTCAGCAAGAAGCGGCAAAACTGCGCCAGCAGATACAAACCTTGCAGAATTCAAACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttgtgtgttatcttgagccctctaaaatccagtactgggtatcttcacacagCAATACTTTCAGCAAGAAGCAGCAAAAATGCGCCACCAGATACAGACCTTGCAGAATGCAAACAG
                      ctctaaa  putative branch site (score: 3)
                                          tatcttc  putative PPT
                       tctaaaat  TA-rich tract