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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccaaagtagttgcgccattgctctccatcgaattctttctgatctttataaccttgatgcagGCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCTGGTGTGATAGTGTAACTGACAAGGGAGTGACCAGCTTGGCATCAGGGTGCCCTG

Basic information

species Oryza sativa
transcript LOC_Os01g65920.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g65920.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G138176_T01 (Zea mays), 3'ss of exon 3
---------------gta-ccaaagtag-ttgcgccattgctctccatcgaattctttctgatctttataaccttgatgcagGCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCTGGTGTGATAGTGTAACTGACAAGGGAGTGACCAGCTTGGCATCAGGGTGCCCTG
               | | ||   || | ||| ||    | |   |   |   | ||  || | | |     | || || |||||||||||||| ||||||| ||||| ||||| |||||||| |||||||||||| |  | ||||||||||| ||||||||| |||| || || |||||||
gtactttcgtttgctgcagccttggtcgcttgagctcgcgttgatccctgctgttttggtggtgtgtcctgtcctg-tgtagGCCATCGCCTGTTACTGTGGCCAGCTGCAGTCGTTGAACCTGGGCTGGTGTGATGGCATCACTGACAAGGGGGTGACCAGCCTGGCTTCGGGATGCCCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|1631760|gb|C19489.1|C19489
EST:     GCCTGAATCTGTGCGGGTGTGTGAGGGCAGTTTCCGACAGAGCATTGCAG                         GCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCTNGTGT
genomic: GCCTGAATCTGTGCGGGTGTGTGAGGGCAGTTTCCGACAGAGCATTGCAGgtaccaaagt ... cttgatgcagGCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCTGGTGT
EST: gi|4880775|gb|AU065074.1|AU065074
EST:     GCCTGAATCTGTGCGGGTGTGTGAGGGCAGTTTCCGACAGAGCATTGCAG                         GCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCTGGTGT
genomic: GCCTGAATCTGTGCGGGTGTGTGAGGGCAGTTTCCGACAGAGCATTGCAGgtaccaaagt ... cttgatgcagGCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCTGGTGT
EST: gi|218481897|gb|FG957216.1|FG957216
EST:     GCCTGAATCTGTGCGGGTGTGTGAGGGCAGTTTCCGACAGAGCATT----                         GCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCTGGTGT
genomic: GCCTGAATCTGTGCGGGTGTGTGAGGGCAGTTTCCGACAGAGCATTGCAGgtaccaaagt ... cttgatgcagGCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCTGGTGT
EST: gi|29646357|gb|CB651364.1|CB651364
EST:     GCCTGAATCTGTGCGGGTGTGTGAGGGCAGTTTCCGACAGAGCATTGCAG                         GCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCTGGTGT
genomic: GCCTGAATCTGTGCGGGTGTGTGAGGGCAGTTTCCGACAGAGCATTGCAGgtaccaaagt ... cttgatgcagGCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCTGGTGT
EST: gi|5003534|gb|AU068683.1|AU068683
EST:     TGTGCGGGTNTTTGAGGGCAGTTTCCGAACAGAGCATTGCAG                         GCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCTGGTGT
genomic: TGTGCGGGTGTGTGAGGGCAGTTTCCG-ACAGAGCATTGCAGgtaccaaagt ... cttgatgcagGCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCTGGTGT
EST: gi|4880754|gb|AU065053.1|AU065053
EST:     GCCTGAATCTGTGCGGGTGTGTGAGGGCAGTTTCCGACAGAGCATTGCAG                         GCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCTGGTGT
genomic: GCCTGAATCTGTGCGGGTGTGTGAGGGCAGTTTCCGACAGAGCATTGCAGgtaccaaagt ... cttgatgcagGCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCTGGTGT
EST: gi|29643872|gb|CB648879.1|CB648879
EST:     GCCTGAATCTGTGCGGGTGTGTGAGGGCAGTTTCCGACAGAGCATTGCAG                         GCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCTGGTGT
genomic: GCCTGAATCTGTGCGGGTGTGTGAGGGCAGTTTCCGACAGAGCATTGCAGgtaccaaagt ... cttgatgcagGCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCTGGTGT
EST: gi|29643871|gb|CB648878.1|CB648878
EST:     GCCTGAATCTGTGCGGGTGTGTGAGGGCAGTTTCCGACAGAGCATTGCAG                         GCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCT
genomic: GCCTGAATCTGTGCGGGTGTGTGAGGGCAGTTTCCGACAGAGCATTGCAGgtaccaaagt ... cttgatgcagGCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCT
EST: gi|218478607|gb|FG965535.1|FG965535
EST:     GCCTGAATCTGTGCGGGTGTGTGAGGGCAGTTTCCGACAGAGCATTGCAG                         GCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCTGGTGT
genomic: GCCTGAATCTGTGCGGGTGTGTGAGGGCAGTTTCCGACAGAGCATTGCAGgtaccaaagt ... cttgatgcagGCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCTGGTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgcgccattgctctccatcgaattctttctgatctttataaccttgatgcagGCCATCGCCTGTAACTGTGGTCAGCTTCAGTCTTTGAACCTAGGCTGGTGTGATAGTGTAACTGACAAGGGAGTGACCAGCTTGGCATCAGGGTGCCCTG
                                  atctttataa  TA-rich tract