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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtacatcataagttcgtaactgagccccggtagtaaaatattattagtagagatcaccgtgaaattattcttaaaccgggtgcatttctgaatgcagGTTTATGCACAGCCCATATTTGCGACAATGGAGAGATGGATCTCCTCCCGGTGGCCGGAGGCCAAGTTCATCAACAGCGAGTACACCGTAAACGTGCCGC

Basic information

species Oryza sativa
transcript LOC_Os01g65660.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g65660.1 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM5G830545_T02 (Zea mays), 3'ss of exon 4
----gtcagtacatcataagttcgtaactgagccccggtagtaaaatattattagtagagatcaccgtgaaattattcttaaaccgg-gtgcatttctgaatgcagGTTTATGCACAGCCCATATTTGCGACAATGGAGAGATGGATCTCCTCCCGGTGGCCGGAGGCCAAGTTCATCAACAGCGAGTACACCGTAAACGTGCCGC
    ||||| ||||| | |||| ||        | |   | || || |   | ||| |    |||  | |      |||||| |    |   || ||| || |||||| ||||| ||||| || |||||  |  | ||||| |||    |||||||||||||||||||||||||||||| ||||| ||||||||| | | | ||||
gtcagtcagcacatc-tcagttggtgcacaccacaccacactagaagaaattcagttg---ccacatttagtcgtatcttaagctaaagctaatgtctcaacgcagGTATATGCGCAGCCTATCTTTGCTTCGGTTGAGAGGTGGGCTGCCTCCCGGTGGCCGGAGGCCAAGTTCATCAGCAGCGCGTACACCGTCAGCATCCCGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagtagagatcaccgtgaaattattcttaaaccgggtgcatttctgaatgcagGTTTATGCACAGCCCATATTTGCGACAATGGAGAGATGGATCTCCTCCCGGTGGCCGGAGGCCAAGTTCATCAACAGCGAGTACACCGTAAACGTGCCGC
                                        catttct  CT-rich tract
                 tgaaattattcttaaa  TA-rich tract