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gtaaaatagttactaattcagtattgttgtttcgatgaagtgtaatatgtgctacagtgctccacactccttaagccaagttccctgtcagttaacacaacattattgcatgcttgttgcacttgttattttttagccagttctagtttttggtaagtacctttacttgaattgttcggcagGAGCTTGCATTCCAAAGGCTAATATTTATGACTATGCTTGCGTGGGAAGATCCATATGGTGAAGATGATGACACAGAGTCTTCACTAGATAACTATTCTA
species | Oryza sativa |
transcript | LOC_Os01g64870.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTTCCGCTATTTGTCAAGAGATAACTCTGATTTGCATCCAAGTTTAAAG GAGCTTGCATTCCAAAGGCTAATATTTATGACTATGCTTGCGTGGGAAGATEST: gi|29644941|gb|CB649948.1|CB649948
genomic: GCTTCCGCTATTTGTCAAGAGATAACTCTGATTTGCATCCAAGTTTAAAGgtaaaatagt ... tgttcggcagGAGCTTGCATTCCAAAGGCTAATATTTATGACTATGCTTGCGTGGGAAGAT
EST: GCTTCCGCTATTTGTCAAGAGATAACTCTGATTTGCATCCAAGTTTAAAG GAGCTTGCATTCCAAAGGCTAATATTTATGACTATGCTTGCGTGGGAAGATEST: gi|45244988|gb|AB118212.1|AB118212
genomic: GCTTCCGCTATTTGTCAAGAGATAACTCTGATTTGCATCCAAGTTTAAAGgtaaaatagt ... tgttcggcagGAGCTTGCATTCCAAAGGCTAATATTTATGACTATGCTTGCGTGGGAAGAT
EST: GCTTCCGCTATTTGTCAAGAGATAACTCTGATTTGCATCCAAGTTTAAAG GAGCTTGCATTCCAAAAGCCTAATATTTATGACTATGCTTGCGTGGGAAGAEST: gi|29623235|gb|CB628246.1|CB628246
genomic: GCTTCCGCTATTTGTCAAGAGATAACTCTGATTTGCATCCAAGTTTAAAGgtaaaatagt ... tgttcggcagGAGCTTGCATTCCAAAGGC-TAATATTTATGACTATGCTTGCGTGGGAAGA
EST: GCTTCCGCTATTTGTCAAGAGATAACTCTGATTTGCATCCAAGTTTAAAG GAGCTTGCATTCCAAAGGCTAATATTTATGACTATGCTTGCGTGGGAAGATEST: gi|58666968|gb|CK055654.1|CK055654
genomic: GCTTCCGCTATTTGTCAAGAGATAACTCTGATTTGCATCCAAGTTTAAAGgtaaaatagt ... tgttcggcagGAGCTTGCATTCCAAAGGCTAATATTTATGACTATGCTTGCGTGGGAAGAT
EST: GCTTCCGCTATTTGTCAAGAGATAACTCTGATTTGCATCCAAGTTTAAAG GAGCTTGCATTCCAAAGGCTAATATTTATGACTATGCTTGCGTGGGAAGATEST: gi|88726598|gb|CI750253.1|CI750253
genomic: GCTTCCGCTATTTGTCAAGAGATAACTCTGATTTGCATCCAAGTTTAAAGgtaaaatagt ... tgttcggcagGAGCTTGCATTCCAAAGGCTAATATTTATGACTATGCTTGCGTGGGAAGAT
EST: GCTTCCGCTATTTGTCAAGAGATAACTCTGATTTGCATCCAAGTTTAAAG GAGCTTGCATTCCAAAGGCTAATATTTATGACTATGCTTGCGTGGGAAGATEST: gi|58695955|gb|CK084642.1|CK084642
genomic: GCTTCCGCTATTTGTCAAGAGATAACTCTGATTTGCATCCAAGTTTAAAGgtaaaatagt ... tgttcggcagGAGCTTGCATTCCAAAGGCTAATATTTATGACTATGCTTGCGTGGGAAGAT
EST: TGTCAAGAGATAACTCTGATTTGCATCCAAGTTTAAAG GAGCTTGCATTCCAAAGGCTAATATTTATGACTATGCTTGCGTGGGAAGATEST: gi|88725657|gb|CI748916.1|CI748916
genomic: TGTCAAGAGATAACTCTGATTTGCATCCAAGTTTAAAGgtaaaatagt ... tgttcggcagGAGCTTGCATTCCAAAGGCTAATATTTATGACTATGCTTGCGTGGGAAGAT
EST: GCTTCCGCTATTTGTCAAGAGATAACTCTGATTTGCATCCAAGTTTAAAG GAGCTTGCATTCCAAAGGCTAATATTTATGACTATGCTTGCGTGGGAAGAT
genomic: GCTTCCGCTATTTGTCAAGAGATAACTCTGATTTGCATCCAAGTTTAAAGgtaaaatagt ... tgttcggcagGAGCTTGCATTCCAAAGGCTAATATTTATGACTATGCTTGCGTGGGAAGAT
attttttagccagttctagtttttggtaagtacctttacttgaattgttcggcagGAGCTTGCATTCCAAAGGCTAATATTTATGACTATGCTTGCGTGGGAAGATCCATATGGTGAAGATGATGACACAGAGTCTTCACTAGATAACTATTCTA
tagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatagttactaattcagtattgttgtttcgatgaagtgtaatatgtgctacagtgctccacactccttaagccaagttccctgtcagttaacacaacattattgcatgcttgttgcacttgttattttttagccagttctagtttttggtaagtacctttacttgaattgttcggcagGAGCTTGCATTCCAAAGGCTAATATTTATGACTATGCTTGCGTGGGAAGATCCATATGGTGAAGATGATGACACAGAGTCTTCACTAGATAACTATTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
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