Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgatctcggcttctactttttttttttctgtttgagttgttataaatggacatgcgtggttgtaatgtggttgtgctgctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATACTACAATACAATTCAACCCAGTGTAAG

Basic information

species Oryza sativa
transcript LOC_Os01g64770.5
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29656748|gb|CB653023.1|CB653023
EST:     AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
genomic: AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
EST: gi|88585290|gb|CI702911.1|CI702911
EST:     AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
genomic: AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
EST: gi|88344519|gb|CI677575.1|CI677575
EST:     AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
genomic: AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
EST: gi|88722525|gb|CI746035.1|CI746035
EST:     GCCGTTCGGCACTGTCGCCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
genomic: GCCGTTCGGCACTGTCGCC-AAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
EST: gi|88590878|gb|CI707773.1|CI707773
EST:     AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
genomic: AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
EST: gi|88334859|gb|CI648634.1|CI648634
EST:     AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
genomic: AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
EST: gi|33798640|gb|CF325178.1|CF325178
EST:     AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
genomic: AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
EST: gi|88355035|gb|CI615916.1|CI615916
EST:     AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
genomic: AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
EST: gi|88362576|gb|CI607334.1|CI607334
EST:     AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
genomic: AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
EST: gi|88426086|gb|CI604375.1|CI604375
EST:     AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
genomic: AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
EST: gi|88309155|gb|CI654774.1|CI654774
EST:     AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
genomic: AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
EST: gi|88348634|gb|CI634229.1|CI634229
EST:     AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
genomic: AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
EST: gi|88308532|gb|CI650941.1|CI650941
EST:     GCCGTTCGGCACTGTCGCCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
genomic: GCCGTTCGGCACTGTCGCC-AAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
EST: gi|88739105|gb|CI762613.1|CI762613
EST:     AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAAT
genomic: AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAAT
EST: gi|88390459|gb|CI607495.1|CI607495
EST:     AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
genomic: AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
EST: gi|88326048|gb|CI651098.1|CI651098
EST:     AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
genomic: AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
EST: gi|88403282|gb|CI571023.1|CI571023
EST:     AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
genomic: AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
EST: gi|88400865|gb|CI616870.1|CI616870
EST:     AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
genomic: AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
EST: gi|88347482|gb|CI637422.1|CI637422
EST:     AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
genomic: AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
EST: gi|33798687|gb|CF325201.1|CF325201
EST:     AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAG                         GCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC
genomic: AGCCGTTCGGCACTGTCGCCAAGCTCGTCATGCTGCGTGCTAAGAACCAGgtttgatctc ... gctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagttgttataaatggacatgcgtggttgtaatgtggttgtgctgctgttaaagGCTCTCGTCCAGATGGAGGATTTAGCTTCTGCTGTGAATGTGATCCAATACTACAATACAATTCAACCCAGTGTAAG
     tgttataaat  TA-rich tract