1 5' 3' | 2 5' 3' | 3 5' 3' |
...cactttttagatgcaaatccagaagatgcttttttgtcacaagagtttgtcaggcattcttatatcaaatgtatcattgcttctttttgtgtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACAACTTTGCAACTACATGCGTCTGCCGGGTCCCCAAGCATCTCAGAGAGG
species | Oryza sativa |
transcript | LOC_Os01g63890.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|88688900|gb|CI732476.1|CI732476
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|89183690|gb|CI046255.1|CI046255
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|88538216|gb|CI467228.1|CI467228
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: ATCTGATTGCAAAGTGGAAAAAG CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|86821074|gb|CI357724.1|CI357724
genomic: ATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|88531540|gb|CI460022.1|CI460022
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: TCTGATTGCAAAGTGGAAAAAG CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|88522801|gb|CI450590.1|CI450590
genomic: TCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GATTGCAAAGTGGAAAAAG CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|88980059|gb|CI026349.1|CI026349
genomic: GATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|86826773|gb|CI268712.1|CI268712
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|89183697|gb|CI046262.1|CI046262
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|88908885|gb|CI716610.1|CI716610
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|88668336|gb|CI723075.1|CI723075
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|87013784|gb|CI269283.1|CI269283
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|87025420|gb|CI267786.1|CI267786
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|89170119|gb|CI039396.1|CI039396
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|88670638|gb|CI724754.1|CI724754
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|66928127|gb|CX114975.1|CX114975
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGAGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|88529433|gb|CI457748.1|CI457748
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: AGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|86825683|gb|CI361825.1|CI361825
genomic: AGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: TATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|86490854|gb|CI133487.1|CI133487
genomic: TATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|15849698|gb|BI797974.1|BI797974
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGAGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|88902698|gb|CI088236.1|CI088236
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|218481045|gb|FG949218.1|FG949218
genomic: GGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGAGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGAACACEST: gi|88672021|gb|CI726137.1|CI726137
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|88676223|gb|CI730336.1|CI730336
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|218485232|gb|FG957354.1|FG957354
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGAGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGAGCACEST: gi|86825520|gb|CI361710.1|CI361710
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|218484368|gb|FG949629.1|FG949629
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGTGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|88540539|gb|CI468592.1|CI468592
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GTAATCTGATTGCAAAGTGGAAAAAG CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|89172063|gb|CI721122.1|CI721122
genomic: GTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|88224609|gb|CI222789.1|CI222789
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|88225582|gb|CI225498.1|CI225498
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|86427879|gb|CI072976.1|CI072976
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|86535557|gb|CI175763.1|CI175763
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCAGGCTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|86595501|gb|CI264598.1|CI264598
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: ATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|86876136|gb|CI325614.1|CI325614
genomic: ATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|4716862|gb|AU057978.1|AU057978
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACEST: gi|87019415|gb|CI279925.1|CI279925
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
EST: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAG CCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
genomic: GCCTGGACCAGGGTTATGCAGACCGTAATCTGATTGCAAAGTGGAAAAAGgttagtattc ... gtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCAC
tttgtcaggcattcttatatcaaatgtatcattgcttctttttgtgtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACAACTTTGCAACTACATGCGTCTGCCGGGTCCCCAAGCATCTCAGAGAGG
tgttttc CT-rich tract
attcttatatcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactttttagatgcaaatccagaagatgcttttttgtcacaagagtttgtcaggcattcttatatcaaatgtatcattgcttctttttgtgtgttttcagCCGGGTTATGAGCGCCTTTGCTGTCTTCGATGCATACAGACACGAGACCACAACTTTGCAACTACATGCGTCTGCCGGGTCCCCAAGCATCTCAGAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - -gatgcaa
- - - - - - - - - - - -agatgct
- - - - - - - - - - - - - - - - - - -cacaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - ggcattc