1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtttgcactgtcaagaagcttatcttgttgcggtttgcaaggggataaacagagtaaagaacgcatgttctgattagttggaaactttttctgcttgcagGAATGTGGGCCATGCACTGCCATATCGATTCTCACTTCGCCATTGGCTTGGCAATGGTGTTCGAGGTGGAGAGCGGGCCGACGCCGGGGACGACGCTGCC
species | Oryza sativa |
transcript | LOC_Os01g63180.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
taaacagagtaaagaacgcatgttctgattagttggaaactttttctgcttgcagGAATGTGGGCCATGCACTGCCATATCGATTCTCACTTCGCCATTGGCTTGGCAATGGTGTTCGAGGTGGAGAGCGGGCCGACGCCGGGGACGACGCTGCC
ttctgat putative branch site (score: 1)
ctttttctgcttgc putative PPT
aaacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcactgtcaagaagcttatcttgttgcggtttgcaaggggataaacagagtaaagaacgcatgttctgattagttggaaactttttctgcttgcagGAATGTGGGCCATGCACTGCCATATCGATTCTCACTTCGCCATTGGCTTGGCAATGGTGTTCGAGGTGGAGAGCGGGCCGACGCCGGGGACGACGCTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- -tgcactg
- - - - - - - - - - - - ttgttgc
- - - - - - - - - - - - - - - - - -tgcaagg
- - - - - - - - - - - - - - - - - - - - - - ataaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - agtaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgat