1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgctgactgctgctgtcttgttccttctattgaccgacctcaacttctgaacgctactagtagtgcaagtttattctgctatttcgaattatgttctatcccttcctcttgaagacgtcccaaactctgcagGTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTGAAAGATCTGCAGCTGGATTACGTTGATCTGTATCTG
species | Oryza sativa |
transcript | LOC_Os01g62880.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATG GTGCAGCGACCTCGCACCTGAAGATGTCCAACTCGCAATGGATAGTACACTEST: gi|88357926|gb|CI650662.1|CI650662
genomic: GATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATGgtgctgactg ... aactctgcagGTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACT
EST: GATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATG GTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTEST: gi|88363085|gb|CI616242.1|CI616242
genomic: GATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATGgtgctgactg ... aactctgcagGTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACT
EST: GATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATG GTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGEST: gi|88357168|gb|CI616055.1|CI616055
genomic: GATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATGgtgctgactg ... aactctgcagGTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAG
EST: GATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATG GTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTEST: gi|58688119|gb|CK076806.1|CK076806
genomic: GATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATGgtgctgactg ... aactctgcagGTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACT
EST: GATGATGGGG-TGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATG GTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTEST: gi|33823226|gb|CF337413.1|CF337413
genomic: GATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATGgtgctgactg ... aactctgcagGTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACT
EST: GATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATG GTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTEST: gi|88361380|gb|CI626484.1|CI626484
genomic: GATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATGgtgctgactg ... aactctgcagGTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACT
EST: GATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATG GTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTEST: gi|86888764|gb|CI307822.1|CI307822
genomic: GATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATGgtgctgactg ... aactctgcagGTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACT
EST: GATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATG GTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTEST: gi|9865212|gb|AU100962.1|AU100962
genomic: GATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATGgtgctgactg ... aactctgcagGTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACT
EST: GATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCAACTNCAAGATATN GTGCAGCGACCT
genomic: GATGATGGGGTTGTCAAGCGGGAAGACCTCTTCATCACCTCCAAGATATGgtgctgactg ... aactctgcagGTGCAGCGACCT
gctatttcgaattatgttctatcccttcctcttgaagacgtcccaaactctgcagGTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTGAAAGATCTGCAGCTGGATTACGTTGATCTGTATCTG
aattatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctgactgctgctgtcttgttccttctattgaccgacctcaacttctgaacgctactagtagtgcaagtttattctgctatttcgaattatgttctatcccttcctcttgaagacgtcccaaactctgcagGTGCAGCGACCTCGCACCTGAAGATGTCCCACTCGCAATGGATAGTACACTGAAAGATCTGCAGCTGGATTACGTTGATCTGTATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA