1 5' 3' | 2 5' 3' | 3 5' 3' |
gtccgtttcaattcttcgtcccgactcgatcatatcttctcctgatgttctctcgcccttctttctcatcaccgatggtttcttcttgaatccgagttgcagTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTGCGCGCAAG
species | Oryza sativa |
transcript | LOC_Os01g62370.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGG TTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTEST: gi|86437353|gb|CI119075.1|CI119075
genomic: CGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGgtccgtttca ... cgagttgcagTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCT
EST: CGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGG TTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTEST: gi|86601596|gb|CI256101.1|CI256101
genomic: CGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGgtccgtttca ... cgagttgcagTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCT
EST: CGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGG TTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTEST: gi|29672128|gb|CB668403.1|CB668403
genomic: CGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGgtccgtttca ... cgagttgcagTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCT
EST: CGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGG TTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTEST: gi|29670257|gb|CB666532.1|CB666532
genomic: CGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGgtccgtttca ... cgagttgcagTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCT
EST: CGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATGGGCGAGAAAGG TTTCAACTGGGGGATGCCGGTGAAGAGCAAGTCGGAGCGCGTGATGAGGCTEST: gi|29672129|gb|CB668404.1|CB668404
genomic: CGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGgtccgtttca ... cgagttgcagTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCT
EST: CGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGG TTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTEST: gi|117233785|gb|CT847729.1|CT847729
genomic: CGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGgtccgtttca ... cgagttgcagTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCT
EST: CGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGG TTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTEST: gi|89179836|gb|CI044115.1|CI044115
genomic: CGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGgtccgtttca ... cgagttgcagTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCT
EST: TTCCAGCACATCGACGAGAAAGG TTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTEST: gi|218505226|gb|FG967889.1|FG967889
genomic: TTCCAGCACATCGACGAGAAAGGgtccgtttca ... cgagttgcagTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCT
EST: CGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGG TTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTEST: gi|87018416|gb|CI252170.1|CI252170
genomic: CGGGAGGTCATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGgtccgtttca ... cgagttgcagTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCT
EST: ATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGG TTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCT
genomic: ATCGAGCAGATGGTCTCCTTCCAGCACATCGACGAGAAAGGgtccgtttca ... cgagttgcagTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccgtttcaattcttcgtcccgactcgatcatatcttctcctgatgttctctcgcccttctttctcatcaccgatggtttcttcttgaatccgagttgcagTTTCAACTGGGGGATGACGGTGAAGAGCAAGTCGGAGCGCGTGCTGAGGCTGCTGGAGCGGGGCCCCTTCCTGGAGGATGAGCGTGAGCGTGCGCGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG