1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctcagttgtatgtaagttttgtttcatttttcattttctggccaattcttacctttgacaaagagaatttgcaaactaaatcccttctcttgttgtgcagGTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCTTTTTGCAATCCTTATTGTAATTCATTTATATGGACCTATAGTAAGCTCT
species | Oryza sativa |
transcript | LOC_Os01g62350.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAGCAAAGAAGAAGAGAGAGGAGATGGTGGGTGTCATCAAGAAGATGAG GTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCTEST: gi|9865067|gb|AU100817.1|AU100817
genomic: AGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGATGAGgtgtgtgtct ... tgttgtgcagGTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCT
EST: AGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGATGAG GTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCTEST: gi|86529019|gb|CI169225.1|CI169225
genomic: AGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGATGAGgtgtgtgtct ... tgttgtgcagGTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCT
EST: AGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGATGAG GTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCTEST: gi|88315091|gb|CI610150.1|CI610150
genomic: AGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGATGAGgtgtgtgtct ... tgttgtgcagGTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCT
EST: AGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGATGAG GTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCTEST: gi|87016064|gb|CI281807.1|CI281807
genomic: AGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGATGAGgtgtgtgtct ... tgttgtgcagGTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCT
EST: AGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGATGAG GTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCTEST: gi|88369733|gb|CI680402.1|CI680402
genomic: AGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGATGAGgtgtgtgtct ... tgttgtgcagGTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCT
EST: AGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGATGAG GTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGEST: gi|58594171|gb|CF992479.1|CF992479
genomic: AGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGATGAGgtgtgtgtct ... tgttgtgcagGTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAG
EST: AGAGCAAAGAAGAAGAGAGAGGAGATGGTGGGTGTCATCAGGAAGATGAG GTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCTEST: gi|88969346|gb|CI382894.1|CI382894
genomic: AGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGATGAGgtgtgtgtct ... tgttgtgcagGTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCT
EST: AGAGCAAAAAAGAAGAGAGAGGAGATGGCGGGTGTCATCACGAAGATGAG GTCTGCTGCTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCTEST: gi|88428303|gb|CI562569.1|CI562569
genomic: AGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGATGAGgtgtgtgtct ... tgttgtgcagGTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCT
EST: AGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGATGAG GTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCT
genomic: AGAGCAAAGAAGAAGAGAGAGGAGATGGCGGGTGTCATCAGGAAGATGAGgtgtgtgtct ... tgttgtgcagGTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCT
ttcttacctttgacaaagagaatttgcaaactaaatcccttctcttgttgtgcagGTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCTTTTTGCAATCCTTATTGTAATTCATTTATATGGACCTATAGTAAGCTCT
aactaaa putative branch site (score: 5)
tcccttctcttgttgt CT-rich tract
aaactaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcagttgtatgtaagttttgtttcatttttcattttctggccaattcttacctttgacaaagagaatttgcaaactaaatcccttctcttgttgtgcagGTCTGCTGGTACTACTGACAAGAAGAAATAGAAGTTTCAAGTTGAAGATCTTTTTGCAATCCTTATTGTAATTCATTTATATGGACCTATAGTAAGCTCT
- - -ttgtatg
- - - - - - - - - -tgtttca
- - - - - - - - - - -tttcatt
- - - - - - - - - - - - - - - - - -ttctggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactaaa