1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttaaacacacagaaaattgtagtcaggacaatgcgtagtgtattttgcctgctgtttggtggacctttgttctgaacttctgcctactgttcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTGTAAGGAAATCACAAGAAATGCTCTGAAGAAACCGGCAGTACTGGGGAA
species | Oryza sativa |
transcript | LOC_Os01g62244.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|33656879|gb|CF279493.1|CF279493
genomic: TCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTTTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|33682529|gb|CF310768.1|CF310768
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|33693886|gb|CF322125.1|CF322125
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|88518622|gb|CI446276.1|CI446276
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|9866226|gb|AU101976.1|AU101976
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCAAATGATGAATCNCCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|86421652|gb|CI057641.1|CI057641
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|218503159|gb|FG952517.1|FG952517
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|88994676|gb|CI036257.1|CI036257
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCCAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|89177556|gb|CI390735.1|CI390735
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|218489286|gb|FG970461.1|FG970461
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|88985016|gb|CI011872.1|CI011872
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|15846873|gb|BI795149.1|BI795149
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: ATGCTTTCTGGTCCAAATGATGAATCACCACGCACAATATTGAA-CAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|8860110|gb|AU097428.1|AU097428
genomic: ATGCTTTCTGGTCCAAATGATGAATCACCA-GCA-AATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|86870070|gb|CI317991.1|CI317991
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCAAATGAT-AATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGGATGACTTCAAGAAAAAGGTTAGGCGCCTEST: gi|89177713|gb|CI390892.1|CI390892
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGA-GGGATGACTTCAAGAAAAAGGTTAGGCGCCT
EST: GATGCTTTCTGGTCCAAATGATGAATCACCAGCCAAATATTGAAGCATCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|86527640|gb|CI167846.1|CI167846
genomic: GATGCTTTCTGGTCCAAATGATGAATCACCAG-CAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|33680806|gb|CF309045.1|CF309045
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|33655964|gb|CF278578.1|CF278578
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|33811991|gb|CF331885.1|CF331885
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTTTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|14191991|gb|AU184202.1|AU184202
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|33803962|gb|CF327857.1|CF327857
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|33687165|gb|CF315404.1|CF315404
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|88979399|gb|CI025901.1|CI025901
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT AAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTEST: gi|88906112|gb|CI375184.1|CI375184
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
EST: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGGT AAGGAATGGAGAGAGAAGA-GGATGACTTCAAGAAAAAGGTTAGGCGCCTT
genomic: CGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCTgtaagttcac ... tcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTT
tgcctgctgtttggtggacctttgttctgaacttctgcctactgttcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTGTAAGGAAATCACAAGAAATGCTCTGAAGAAACCGGCAGTACTGGGGAA
ctgttctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaacacacagaaaattgtagtcaggacaatgcgtagtgtattttgcctgctgtttggtggacctttgttctgaacttctgcctactgttcttgcgcagAAGGAATGGAGAGAGAAGAGGGATGACTTCAAGAAAAAGGTTAGGCGCCTTGTAAGGAAATCACAAGAAATGCTCTGAAGAAACCGGCAGTACTGGGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - acacaca
- - - - - - - - - - - - - - caatgcg
- - - - - - - - - - - - - - - - - - - - - - -tgcctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - tttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgcc