Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagctttcctcattgtaacttcatgtttctgtaactccatgatccataattttaacacagcataatattggtcaattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATAC

Basic information

species Oryza sativa
transcript LOC_Os01g62244.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g62244.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 3
gtcagctttcc-tcattgtaacttcatgtttctgtaact---ccatgatccataattttaacaca--gcataatatt-ggtcaattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATAC
|| || |||   | | || || ||  | ||| | ||  |   ||    |      || | |||    ||||| |||| ||  || ||||||||||| | ||||| |  || || || |||||||||||||| |||||||| ||||| | |||||||||||| || ||||||||||||||||| ||||||||
gtaagatttttattagtgaaagtt-gtatttatttagtttatccgctgttatgttttctgacatcatgcatattatttggggaaatgccagTTTATTCAGATGGGCTGGTGTGTATCTCTATTCTTCATCCACCTGGTGAAGATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATAC

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G085600_T03 (Zea mays), 3'ss of exon 3
gtcagctttcc-tcattgtaactt-catgtttctgtaac-tccatgatccataattttaacaca--gcataatatt-ggtcaattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATAC
|||||||||   | | || || ||  || | | |    | ||     | |    || | |||    |||||||||| |   ||  |||||| ||||| ||||| || || || || |||||||||||||| |||||||| ||||| || ||||||||||| || |||||||| |||||||| ||||| ||
gtcagctttttattagtgaaaattgtatttatttacttcatctgcagttctgttttctgacatcatgcataatatttgaggaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAGATCCAAACGGTTATGAGCTCGCAAGTGAGCGATGGACACCTGTGCACAC

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA12G06960.1 (Glycine max), 3'ss of exon 3
gtcagctttcctcattgtaacttcatgtttctgtaactccatgatccataattttaacacagcataatattggtcaattgc--cagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATAC
|| ||  ||     || | | ||  || || ||        ||| | | |   | ||       |  |  || ||||||    |||| ||||| ||||| || || ||||| || ||||||||||| |||||||| ||||| |||||||| ||||||||||||||||| |||||||| || |||||
gttagtgtttt---ttttgaatttgtgattttgctttgatttgaactaca---tgaaagtgatgtt-ttctgttcaatttttgcagTATATCCCGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGGATCCAAATGGTTACGAGCTTGCGAGTGAGCGCTGGACACCTGTTCATAC

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA15G04470.2 (Glycine max), 3'ss of exon 3
gtcagctttcctcattgtaacttcatgtttctgtaactccatgatccataattttaacacagcataatattggtcaattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATAC
||  | ||  ||||||     || || ||| | |  ||   ||||  |||    | | |  | || ||  || || |||  |||| || || ||||| || || ||||| || ||||||||||| || |||||||| || ||||||||||||||||| |||||||| ||||| || || |||||
gttggtttggctcatt-----tttatttttatcttgctt--tgattgata--catgataatgaatgatgctgttccatttgcagTGTACCCCGATGGGCGAGTTTGCATATCAATTCTTCATCCACCCGGTGATGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACGCCTGTTCATAC

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA11G14980.1 (Glycine max), 3'ss of exon 3
gtcagctttcctcattgtaacttcatgtttctgtaactccatgatc--cataattttaacacagcataatat-tggtcaattgc--cagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATAC
|| || |||  |  || ||| ||  || || ||       | || |  ||| |   | |      ||  |   || ||||||    |||| ||||| ||||| || || ||||| || ||||||||||| |||||||| ||||| ||||||||||||||||| |||||||| |||||||| || |||||
gttagtttttttttttttaattt-gtgattttgctttgataggaacaacatgaaagtgatcagtgatgtttcctgttcaatttttgcagTATATCCTGATGGCCGGGTTTGCATATCAATTCTTCATCCTCCTGGTGAGGATCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATAC

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GLYMA13G40990.1 (Glycine max), 3'ss of exon 3
gtcagctttcctcattgtaacttcatgtttctgtaactccatgatccataattttaacacagcataatattggtcaattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATAC
           |   | | ||    | ||| | |    |   |||  |||  |  ||  ||  || || ||| ||||||  |||| ||||| ||||| || || ||||| || ||||||||||| |||||||| || || ||||||||||||||||| |||||||| ||||| || || |||||
----------gttggtctgacacattttttttatcctgcttcgattaatacatgaaattca--atgatgttgttcaatttgcagTGTATCCTGATGGGCGAGTTTGCATATCAATTCTTCATCCTCCTGGTGACGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACGCCTGTTCATAC

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 3'ss of exon 1
lower sequence: AT3G46460.1 (Arabidopsis thaliana), 3'ss of exon 3
----gtcagctttcctcattgtaacttcat------gtttctgtaactccatgatccataattttaacacagcataatattggtcaattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATAC
    ||    | ||    || |    ||||       ||  | |   |  |  | | |   ||||   | |   |     | ||    ||| ||||||||| ||||| || || || || |||||||| ||||| |||||||||||||| | ||| ||||||||||| |||||||||||||| || || || ||
gttagttctttctctcggttatgcgctcattagctcattgatcttgtttgagtagctaaggttttgtgaaaatgttcgtcttgtggtctgc-agTTTATCCCGATGGCCGCGTTTGTATATCTATTCTACATCCTCCTGGTGATGATCCAAGTGGATATGAGCTTGCAAGTGAGCGTTGGACGCCTGTTCACAC

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 3'ss of exon 1
lower sequence: AT5G59300.1 (Arabidopsis thaliana), 3'ss of exon 3
gtcagctttcctcattgtaacttc-atgtttctgtaactccatgatccataattttaacacag-cataatattggtcaa-------ttgcc----agTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATAC
|| || ||||    |      ||  ||         | || | |    || | |  || |||| | |   | ||||  |       ||| |    ||||||| | ||||| ||||| ||||| |||||||||||||| || ||||||||||| |  |||||||||||||| || ||||||||||| || || |||||
gttagttttctctctatcggttttgatcggggaaggattcaaaggaatatgaatagaagacagacgtttgaatggtttacttatatttgtcctgcagTTTATTCTGATGGTCGTGTTTGCATATCTATTCTTCATCCTCCCGGTGATGATCCTAGCGGTTATGAGCTTGCAAGCGAGCGTTGGACTCCTGTTCATAC

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 3'ss of exon 1
lower sequence: AT3G55380.2 (Arabidopsis thaliana), 3'ss of exon 3
---gtcagctttcctcattgtaacttcatgtttctgtaactccatgatccataattttaacacagcataatattggtcaattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATAC
         ||| ||       |  ||   ||   |    |  | |||  |   || | |      ||| | ||  |  | ||| ||||||| | ||||||   || |||||||||||||||||||| ||||||||||||||  |||| || ||||||||   ||| |||||||| || || |||||
gtgactgatttttctggaaaatatatctctttctcgagcttttaggatttagtcttctgatgatttatactctt--ttgactgc-agTTTATTCTGATGGAAAAGTTTGCATTTCTATTCTTCATCCTCCTGGTGATGATCCTCATGGATACGAGCTTGCCTCTGAACGTTGGACCCCTGTCCATAC

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 3'ss of exon 1
lower sequence: Vv08s0007g00120.t01 (Vitis vinifera), 3'ss of exon 3
gtcagctttc----ctcattgtaacttcatgtttctgtaactccatgatccataa---ttttaacac--agcataa-tattggtcaattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATAC
|| | |||      |   |  ||     || | | | | | |   | ||          | | |  |  |   ||  || |  | ||    |||||||||| |||||||| || ||||| || ||| | ||||| |||||||| || || ||||| ||||||||||| ||||||||||||||||| || || ||
gttaacttcttatgcctctcatatacatatatatatatgaatttctcattggagcactctctgatgctaattgtacctacttcttaaactgcagTTTATCCTGATGGACGAGTTTGCATATCAATTTTACATCCTCCTGGTGAGGACCCAAATGGCTATGAGCTTGCAAGTGAGCGTTGGACACCTGTCCACAC

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 3'ss of exon 1
lower sequence: Vv06s0004g04430.t01 (Vitis vinifera), 3'ss of exon 3
---gtcagctttcctcattgtaacttcatgtttctgtaactccatgatc----cataattttaacacagcataatattggt-caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATAC
   |   | ||  |  | || |  |   || || |  |     |  ||     |||   || ||  || | |  |  | |    | |  |||||||||| |||||||| |||||||| || ||||| ||||| |||||||| || || ||||| ||||||||||| |||||||| ||||  ||| | |||||
gttggttgtttgtccaactgcatgtgtttgatttttgactcttaccattggagcatggcttgaaatcaacttggttcttgcatgaattacagTTTATCCAGATGGACGAGTATGCATATCAATTCTCCATCCTCCTGGTGAGGACCCAAATGGATATGAGCTTGCAAGTGAGCGCTGGATGCCAATCCATAC

upper sequence: LOC_Os01g62244.3 (Oryza sativa), 3'ss of exon 1
lower sequence: PP1S75_236V6.1 (Physcomitrella patens), 3'ss of exon 5
------------------gtcagctttcctcattgtaacttcatgtttctgtaactccatgatccataattttaacacagcataatattggtcaattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATAC
                   || |  | |     ||| |||| || ||||| || |    |  | | || ||  |   ||       | |  |||  ||| ||||||||| |||||||| || |||||||| ||||| ||| | |||||||||||||| |||||||||||  | ||||||||||||||| | || ||||||||
gaaagaactctggtttgactctgaatgcactcatgtgacttaatttttcttta-cgatgttctgcttatttccataccaatccttgacttttcatgtgc-agTTTATCCTGATGGACGGGTTTGCATTTCAATTCTACATGCTCCTGGTGATGATCCAAATGGTTATGAATTGGCGAGTGAGCGTTGGTCTCCCGTGCATAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33689998|gb|CF318237.1|CF318237
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|58588737|gb|CF987045.1|CF987045
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|33656879|gb|CF279493.1|CF279493
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|33803960|gb|CF327856.1|CF327856
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|86904971|gb|CI289118.1|CI289118
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|218503159|gb|FG952517.1|FG952517
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|88334977|gb|CI648752.1|CI648752
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCACAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATCTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|569797|gb|D40646.1|D40646
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTNAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCC
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCC
EST: gi|33663070|gb|CF294037.1|CF294037
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|570100|gb|D40949.1|D40949
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|88327290|gb|CI645067.1|CI645067
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|33687166|gb|CF315405.1|CF315405
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|572403|gb|D41914.1|D41914
EST:     TAACAGTCCTCCAACTGTCAG-TTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATNCATTTCTATTCTTCATCCGC-TGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|33691223|gb|CF319462.1|CF319462
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|571730|gb|D41241.1|D41241
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|218489286|gb|FG970461.1|FG970461
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|88343130|gb|CI641656.1|CI641656
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|33663820|gb|CF294787.1|CF294787
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|33682530|gb|CF310769.1|CF310769
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|88327435|gb|CI645222.1|CI645222
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|33680805|gb|CF309044.1|CF309044
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|88332627|gb|CI651787.1|CI651787
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|33810888|gb|CF331335.1|CF331335
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|33693885|gb|CF322124.1|CF322124
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|33682529|gb|CF310768.1|CF310768
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|33655965|gb|CF278579.1|CF278579
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCT
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCT
EST: gi|218483069|gb|FG969518.1|FG969518
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|88347542|gb|CI637482.1|CI637482
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|88302898|gb|CI668744.1|CI668744
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|88362508|gb|CI623848.1|CI623848
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|570083|gb|D40932.1|D40932
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGGACGTGGTATGCATTTCTATTCTTCAATCCGCCT
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGG-ACGTG-TATGCATTTCTATTCTTCA-TCCGCCT
EST: gi|218494870|gb|FG960750.1|FG960750
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|88396391|gb|CI598503.1|CI598503
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|571742|gb|D41253.1|D41253
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         NTTATCCGGATGGACGTGTATNCATTTCTATTCTT
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTT
EST: gi|570188|gb|D41037.1|D41037
EST:     TAACAGTCCTCCAANTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACCGTGTATGCATTTCTATTCTTCATCCGCCTGGTGAT
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGAC-GTGTATGCATTTCTATTCTTCATCCGCCTGGTGAT
EST: gi|218478108|gb|FG955329.1|FG955329
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|218494462|gb|FG953577.1|FG953577
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|88327593|gb|CI646786.1|CI646786
EST:     CAGTCCTCCAACTGGTCAGAATTTACCCTCAGAAATGTGGC-TCCAAATG                         TTTTTATCCGGANTGGACGTGTATGC
genomic: CAGTCCTCCAACTG-TCAGA-TTTACC-TCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTT--ATCCGGA-TGGACGTGTATGC
EST: gi|33687165|gb|CF315404.1|CF315404
EST:     AGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: AGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|88310491|gb|CI659281.1|CI659281
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|218494770|gb|FG953209.1|FG953209
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|33656745|gb|CF279359.1|CF279359
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCA
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCA
EST: gi|218505567|gb|FG957426.1|FG957426
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|88396389|gb|CI598501.1|CI598501
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|88979399|gb|CI025901.1|CI025901
EST:     TACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|88765871|gb|CI774961.1|CI774961
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCA
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCA
EST: gi|58590948|gb|CF989256.1|CF989256
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|88403835|gb|CI611490.1|CI611490
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
EST: gi|58592613|gb|CF990921.1|CF990921
EST:     TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATG                         TTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG
genomic: TAACAGTCCTCCAACTGTCAGATTTACCTCAGAAATGTGGCATCCAAATGgtcagctttc ... caattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtaactccatgatccataattttaacacagcataatattggtcaattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATAC
                      ttttaac  putative branch site (score: 2)
              atccataattttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcagctttcctcattgtaacttcatgtttctgtaactccatgatccataattttaacacagcataatattggtcaattgccagTTTATCCGGATGGACGTGTATGCATTTCTATTCTTCATCCGCCTGGTGATGATCCCAATGGTTATGAGCTTGCGAGTGAGCGTTGGACACCAGTGCATAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT