1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tcagtatgcagttgtttctattcatttagaatttatatgcttgttaccaattttgatgtatatggttaatagtaatttacgtggctaattatttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCA
species | Oryza sativa |
transcript | LOC_Os01g62080.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTGGTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|58680098|gb|CK068785.1|CK068785
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|117243444|gb|CT848361.1|CT848361
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|88576664|gb|CI670809.1|CI670809
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGNTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|88307805|gb|CI644845.1|CI644845
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|58694718|gb|CK083405.1|CK083405
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|88337067|gb|CI628153.1|CI628153
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|88420986|gb|CI620304.1|CI620304
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|88390894|gb|CI611120.1|CI611120
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|58695186|gb|CK083873.1|CK083873
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|58654607|gb|CK043287.1|CK043287
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GG--CCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGGTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|29665089|gb|CB661364.1|CB661364
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|88412995|gb|CI578846.1|CI578846
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCGCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|58691283|gb|CK079970.1|CK079970
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|88362877|gb|CI614233.1|CI614233
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGGGEST: gi|58593129|gb|CF991437.1|CF991437
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCGGGTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|88431020|gb|CI572010.1|CI572010
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|29679261|gb|CB675536.1|CB675536
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGEST: gi|86891175|gb|CI305952.1|CI305952
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCG
EST: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAG GCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAA
genomic: GGCCCCGCCTCGCCTGGGATGTCGCGCCCCCGCTGTTCCAGCCCCCCAAGgtataatcca ... atttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAA
accaattttgatgtatatggttaatagtaatttacgtggctaattatttttgtagGCAATTCCTATGCTATATTGCGGGCAGGAACTAATCAATGGAAATTTTGCGACCGCTTTTCTGCCACCGCCACCAATCTATTATACAGGACCACCACGCA
ggctaat putative branch site (score: 14)
ttattttt CT-rich tract
tatatggttaatagta TA-rich tract