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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgtgcgcttcgtactctctgccagtataaatgttaaacctttcgttgttgtatgaatatctgatgtctcttctgtcctcctggcaaatttgcaatacgtggggatgtgcactgttaactgcagATGGAG

Basic information

species Oryza sativa
transcript LOC_Os01g61810.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218487228|gb|FG968027.1|FG968027
EST:     TTGAGGAGTACGTTGATCCGTTGAAGATCTATTTACACAAGTACAGAGAG                         ATGGAG
genomic: TTGAGGAGTACGTTGATCCGTTGAAGATCTATTTACACAAGTACAGAGAGgtaattgtgc ... ttaactgcagATGGAG
EST: gi|25797854|gb|CA753815.1|CA753815
EST:     TTGAGGAGTACGTTGATCCGTTGAAGATCTATTTACACAAGTACAGAGAG                         ATGGAG
genomic: TTGAGGAGTACGTTGATCCGTTGAAGATCTATTTACACAAGTACAGAGAGgtaattgtgc ... ttaactgcagATGGAG
EST: gi|1631561|gb|C19290.1|C19290
EST:     TTGAGGAGTACGTTGATCCGTTGAAGATCTATTTACACAAGTACAGAGAG                         ATGGAG
genomic: TTGAGGAGTACGTTGATCCGTTGAAGATCTATTTACACAAGTACAGAGAGgtaattgtgc ... ttaactgcagATGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctgtcctcctggcaaatttgcaatacgtggggatgtgcactgttaactgcagATGGAG
                                           tgttaac  putative branch site (score: 2)
                aaattt  TA-rich tract