1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cttccattgggacttgatgagctttaaatctttgttaagttctgttttatttatgtgacattaagtggctacttattttacagaactaatattatttcagGCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTGGTTGATGGAAACGCCGTCAAACGACAAACTGCGCACACCTTGCATTGCA
species | Oryza sativa |
transcript | LOC_Os01g61720.10 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTG GCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTGEST: gi|58692460|gb|CK081147.1|CK081147
genomic: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTGgtaaccaact ... attatttcagGCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTG
EST: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTG GCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTGEST: gi|29677325|gb|CB673600.1|CB673600
genomic: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTGgtaaccaact ... attatttcagGCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTG
EST: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTG GCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTGEST: gi|58667874|gb|CK056560.1|CK056560
genomic: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTGgtaaccaact ... attatttcagGCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTG
EST: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTG GCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTGEST: gi|58596535|gb|CK007063.1|CK007063
genomic: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTGgtaaccaact ... attatttcagGCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTG
EST: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTG GCGAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTGEST: gi|58683061|gb|CK071748.1|CK071748
genomic: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTGgtaaccaact ... attatttcagGCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTG
EST: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTG GCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTGEST: gi|58678220|gb|CK066907.1|CK066907
genomic: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTGgtaaccaact ... attatttcagGCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTG
EST: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTG GCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTGEST: gi|29638610|gb|CB643619.1|CB643619
genomic: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTGgtaaccaact ... attatttcagGCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTG
EST: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTG GCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTGEST: gi|58683289|gb|CK071976.1|CK071976
genomic: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTGgtaaccaact ... attatttcagGCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTG
EST: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTG GCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTGEST: gi|58660985|gb|CK049665.1|CK049665
genomic: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTGgtaaccaact ... attatttcagGCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTG
EST: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTG GCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTGEST: gi|58683800|gb|CK072487.1|CK072487
genomic: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTGgtaaccaact ... attatttcagGCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTG
EST: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTG GCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTGEST: gi|58680909|gb|CK069596.1|CK069596
genomic: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTGgtaaccaact ... attatttcagGCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTG
EST: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTG GCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTGEST: gi|11026620|gb|AU163221.1|AU163221
genomic: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTGgtaaccaact ... attatttcagGCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTG
EST: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTG GCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTGEST: gi|58689149|gb|CK077836.1|CK077836
genomic: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTGgtaaccaact ... attatttcagGCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTG
EST: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTG GCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTGEST: gi|58695477|gb|CK084164.1|CK084164
genomic: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTGgtaaccaact ... attatttcagGCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTG
EST: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTG GCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTG
genomic: AGGATGAGCTTGCCGCTATCAAGATTCAGACTGCCTTCAGGGGTTATCTGgtaaccaact ... attatttcagGCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTG
tttatttatgtgacattaagtggctacttattttacagaactaatattatttcagGCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTGGTTGATGGAAACGCCGTCAAACGACAAACTGCGCACACCTTGCATTGCA
aactaat putative branch site (score: 2)
ttatttc CT-rich tract
tacttattttacagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttccattgggacttgatgagctttaaatctttgttaagttctgttttatttatgtgacattaagtggctacttattttacagaactaatattatttcagGCAAGAAGAGCGCTGCGAGCACTTAGAGGGCTAGTTAGATTGAAGTCGCTGGTTGATGGAAACGCCGTCAAACGACAAACTGCGCACACCTTGCATTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA