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...tttggtatttgcatgttgttcaattcacatcaatgaggcaattactggacatgcccctactaaaattatgaatgttttctcttttgtaattttctttcagAATGATATGTTAGTAAGGGATAAAATATTATTACTTTTGGACTCCTGGCAAGAAGCATTTGGTGGACCTGGAAGTAAATACCCACAATATCACTTTGCGT
species | Oryza sativa |
transcript | LOC_Os01g61030.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGCTGAGCAACATGTTCTGCAAGAAATGGTGAAAATCATCCAGAAGAAG AATGATATGTTAGTAAGGGATAAAATATTATTACTTTTGGACTCCTGGCAAEST: gi|55411220|gb|CV723596.1|CV723596
genomic: TTGCTGAGCAACATGTTCTGCAAGAAATGGTGAAAATCATCCAGAAGAAGgtccctttac ... tttctttcagAATGATATGTTAGTAAGGGATAAAATATTATTACTTTTGGACTCCTGGCAA
EST: TTGCTGAGCAACATGTTCTGCAAGAAATGGTGAAAATCATCCAGAAGAAG AATGATATGTTAGTAAGGGATAAAATATTATTACTTTTGGACTCCTGGCAA
genomic: TTGCTGAGCAACATGTTCTGCAAGAAATGGTGAAAATCATCCAGAAGAAGgtccctttac ... tttctttcagAATGATATGTTAGTAAGGGATAAAATATTATTACTTTTGGACTCCTGGCAA
tggacatgcccctactaaaattatgaatgttttctcttttgtaattttctttcagAATGATATGTTAGTAAGGGATAAAATATTATTACTTTTGGACTCCTGGCAAGAAGCATTTGGTGGACCTGGAAGTAAATACCCACAATATCACTTTGCGT
tactaaa putative branch site (score: 8)
ttttctcttttgtaat putative PPT
tactaaaattatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggtatttgcatgttgttcaattcacatcaatgaggcaattactggacatgcccctactaaaattatgaatgttttctcttttgtaattttctttcagAATGATATGTTAGTAAGGGATAAAATATTATTACTTTTGGACTCCTGGCAAGAAGCATTTGGTGGACCTGGAAGTAAATACCCACAATATCACTTTGCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - -tgcatgt
- - - - - - - - - - - - - - - - -tgaggca
- - - - - - - - - - - - - - - - - - - - - - - - -catgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - actaaaa