Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtttcctctcccccgcttttggtttcttttgctgaatttgtatgtgatgcgaaatcgtagtagaggttggatttgtgatcgccgataacacactggcgatttgcatactgctggaaatttttattctatcttgatattgttgaattgatggcatacaatacaactatctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTGCAATCCATGCTCACATCGTCCGTGTCCGCTCCCGTGAGAACCGGAGGGA

Basic information

species Oryza sativa
transcript LOC_Os01g60790.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g60790.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM5G827266_T03 (Zea mays), 3'ss of exon 3
gtgcgtttcctctcccccgcttttggtttcttttgctgaatttgtatgtgatgcgaaatcgtagtagaggttggatttgtgatcgccgataacacactggcgatttgcatactgctggaaatttttattctatcttgatattgttgaattgatggcatacaatacaactatctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTGCAATCCATGCTCACATCGTCCGTGTCCGCTCCCGTGAGAACCGGAGGGA-----
                                                                                 ||| |   ||   | || |   | |       |    |||| |||| |  | | || | || ||||   || || | ||        | | | | | |||| ||||| ||||| ||||| |||||||||||||| ||||| || || || || ||||| |||||||||||||| ||||| ||||||||||| || |||||     
---------------------------------------------------------------------------------atctctc-tattcctctagatctgtttcgttagtaataaatctttaatgcaacctgttgtt-ttga--cgagggtaaacgt----gttctatggct-caggctacGTCCTCCCGAAGCTGTACGCCAAGGTGCACCACTGCGTCTCGTGCGCGATCCACGCTCACATCGTCCGCGTCCGATCCCGTGAGAAGCGCAGGGACCGCA

upper sequence: LOC_Os01g60790.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM5G827266_T02 (Zea mays), 3'ss of exon 3
gtgcgtttcctctcccccgcttttggtttcttttgctgaatttgtatgtgatgcgaaatcgtagtagaggttggatttgtgatcgccgataacacactggcgatttgcatactgctggaaatttttattctatcttgatattgttgaattgatggcatacaatacaactatctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTGCAATCCATGCTCACATCGTCCGTGTCCGCTCCCGTGAGAACCGGAGGGA
                                                                             |   ||| |   ||   | || |   | |       |    |||| |||| |  | | || | || ||||   || || | ||        | | | | | |||| ||||| ||||| ||||| |||||||||||||| ||||| || || || || ||||| |||||||||||||| ||||| ||||||||||| || |||||
----------------------------------------------------------------------------gtaaaatctctc-tattcctctagatctgtttcgttagtaataaatctttaatgcaacctgttgtt-ttga--cgagggtaaacgt----gttctatggct-cagGCTACGTCCTCCCGAAGCTGTACGCCAAGGTGCACCACTGCGTCTCGTGCGCGATCCACGCTCACATCGTCCGCGTCCGATCCCGTGAGAAGCGCAGGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58689839|gb|CK078526.1|CK078526
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|86529528|gb|CI169734.1|CI169734
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88427794|gb|CI551736.1|CI551736
EST:     ATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: ATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|87037440|gb|CI192062.1|CI192062
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88323655|gb|CI556286.1|CI556286
EST:     CCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88207575|gb|CI207424.1|CI207424
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88846265|gb|CI373033.1|CI373033
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|86530521|gb|CI170727.1|CI170727
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88838536|gb|CI375084.1|CI375084
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCA-GAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88543171|gb|CI473158.1|CI473158
EST:     GGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTTTCCTGTG
genomic: GGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88208105|gb|CI207954.1|CI207954
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|33795579|gb|CF323659.1|CF323659
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGATGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|86425643|gb|CI070740.1|CI070740
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|87023087|gb|CI280104.1|CI280104
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|86423700|gb|CI062461.1|CI062461
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|87025450|gb|CI267816.1|CI267816
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|87014635|gb|CI269342.1|CI269342
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|66915362|gb|CX102210.1|CX102210
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|58594740|gb|CF993048.1|CF993048
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88240155|gb|CI239317.1|CI239317
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88211886|gb|CI211526.1|CI211526
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88427902|gb|CI554410.1|CI554410
EST:     CATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCACCACTGTGTGTCCTGTG
genomic: CATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|218503117|gb|FG965412.1|FG965412
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88206854|gb|CI205170.1|CI205170
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88242199|gb|CI242048.1|CI242048
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88209059|gb|CI208908.1|CI208908
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTCCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|218500719|gb|FG955415.1|FG955415
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|86526546|gb|CI166752.1|CI166752
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88439707|gb|CI541264.1|CI541264
EST:     GGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: GGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88488823|gb|CI426094.1|CI426094
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|38475607|gb|CF959740.1|CF959740
EST:     CGTGGAGCAGGGCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTGGGCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88205411|gb|CI205260.1|CI205260
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|86511192|gb|CI153825.1|CI153825
EST:     CGTGGAGCAGGCCGCCATCGGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|58591433|gb|CF989741.1|CF989741
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88432169|gb|CI563000.1|CI563000
EST:     CCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88211899|gb|CI211539.1|CI211539
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88465720|gb|CI524670.1|CI524670
EST:     TGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: TGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88380688|gb|CI521257.1|CI521257
EST:     CGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|86423419|gb|CI062180.1|CI062180
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88902972|gb|CI088510.1|CI088510
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88283262|gb|CI404708.1|CI404708
EST:     GAGCAGNCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: GAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|86423494|gb|CI062255.1|CI062255
EST:     CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: CGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
EST: gi|88460532|gb|CI532005.1|CI532005
EST:     GCGTGCACGATG                         GATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG
genomic: GCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 94

GACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAGCAGGCCGCCATCAGGGACGTCCAGGAGGCGTGCGTGCACGATGgtgcgtttcc ... ctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTGCAATCCATGCTCACATCGTCCGTGTCCGCTCCCGTGAGAACCGGAGGGA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctatcttgatattgttgaattgatggcatacaatacaactatctcgttgcagGATACGTTCTCCCCAAGCTTTACGCCAAGGTGCATCACTGTGTGTCCTGTGCAATCCATGCTCACATCGTCCGTGTCCGCTCCCGTGAGAACCGGAGGGA
                    aattgat  putative branch site (score: 94)
                                         ctatctc  putative PPT
        ttgatatt  TA-rich tract