1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtatgatgtgattactcatttgtatgaccaccatcaatggtcattcataaaagcagaagttctgagattttaaccttttactgcttgtttcagAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGATGGACTATATCCAG
species | Oryza sativa |
transcript | LOC_Os01g60660.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTG AGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGEST: gi|29683642|gb|CB679917.1|CB679917
genomic: AACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTGgtaagtatga ... cttgtttcagAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGG
EST: AACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTG AGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGEST: gi|29642107|gb|CB647114.1|CB647114
genomic: AACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTGgtaagtatga ... cttgtttcagAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGG
EST: AACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTG AGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGEST: gi|88266358|gb|CI377260.1|CI377260
genomic: AACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTGgtaagtatga ... cttgtttcagAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGG
EST: AACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTG AGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGEST: gi|25800390|gb|CA756351.1|CA756351
genomic: AACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTGgtaagtatga ... cttgtttcagAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGG
EST: AACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTG AGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGEST: gi|29642063|gb|CB647070.1|CB647070
genomic: AACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTGgtaagtatga ... cttgtttcagAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGG
EST: AACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTG AGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGEST: gi|29672821|gb|CB669096.1|CB669096
genomic: AACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTGgtaagtatga ... cttgtttcagAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGG
EST: AACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTG AGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGG
genomic: AACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTGgtaagtatga ... cttgtttcagAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGG
ggtcattcataaaagcagaagttctgagattttaaccttttactgcttgtttcagAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGATGGACTATATCCAG
ttttaac putative branch site (score: 2)
cttgtttc putative PPT
attttaacctttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatgatgtgattactcatttgtatgaccaccatcaatggtcattcataaaagcagaagttctgagattttaaccttttactgcttgtttcagAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGATGGACTATATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA