1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...atattgccagtagctatttctcgagagcaaaatttcatattgctcagtttttgtttacaatcatatttattctcactattgctgataaattatgggccagAGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTTTCTCAACAACGACTGCAAGCTT
species | Oryza sativa |
transcript | LOC_Os01g60440.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAG AGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTTEST: gi|58695768|gb|CK084455.1|CK084455
genomic: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAGgtattatgag ... tatgggccagAGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTT
EST: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAG AGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTTEST: gi|58695973|gb|CK084660.1|CK084660
genomic: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAGgtattatgag ... tatgggccagAGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTT
EST: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAG AGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTTEST: gi|25804372|gb|CA760333.1|CA760333
genomic: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAGgtattatgag ... tatgggccagAGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTT
EST: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAG AGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCANAAGCTGTGAGCTTEST: gi|29636110|gb|CB641119.1|CB641119
genomic: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAGgtattatgag ... tatgggccagAGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTT
EST: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAG AGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTTEST: gi|29622867|gb|CB627878.1|CB627878
genomic: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAGgtattatgag ... tatgggccagAGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTT
EST: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAG AGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTTEST: gi|58684299|gb|CK072986.1|CK072986
genomic: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAGgtattatgag ... tatgggccagAGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTT
EST: TGAACCTGGGAGGCACACAGAG AGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTTEST: gi|58658376|gb|CK047056.1|CK047056
genomic: TGAACCTGGGAGGCACACAGAGgtattatgag ... tatgggccagAGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTT
EST: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAG AGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTTEST: gi|58665117|gb|CK053803.1|CK053803
genomic: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAGgtattatgag ... tatgggccagAGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTT
EST: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAG AGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTTEST: gi|29676650|gb|CB672925.1|CB672925
genomic: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAGgtattatgag ... tatgggccagAGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTT
EST: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAG AGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTTEST: gi|29623070|gb|CB628081.1|CB628081
genomic: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAGgtattatgag ... tatgggccagAGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTT
EST: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAG AGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTT
genomic: ACGCCACTTTCAGAAAAGCTTAAGGAACTGAACCTGGGAGGCACACAGAGgtattatgag ... tatgggccagAGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTT
agtttttgtttacaatcatatttattctcactattgctgataaattatgggccagAGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTTTCTCAACAACGACTGCAAGCTT
ttgtttacaatcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattgccagtagctatttctcgagagcaaaatttcatattgctcagtttttgtttacaatcatatttattctcactattgctgataaattatgggccagAGATGAGTACTTTGCTTGGGGTCTTCACCAGATATCAAAAGCTGTGAGCTTTCTCAACAACGACTGCAAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - -cagtagc
- - - - - - - - - - - - gagcaaa
- - - - - - - - - - - - - - - - - - -tattgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - acaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat