Sequence
atgc intronic sequence ATGC exonic sequencegtatggtatttatgtggttatgttcaagataagttactgtgcatactaattctagatagataaaatattttgatgaaaattagatcatagcatgacttatgttgtgcttccattgcctttacagGTTAAACCAATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCATGAGGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATG
Basic information
species | Oryza sativa |
transcript | LOC_Os01g58690.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g58690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G086246_T01 (Zea mays), 3'ss of exon 3
-----------------------------gtatggtatttatg-tggttat---gttcaagataagttactgtgca-tactaattctagata-gataaaatattttgatgaaaattagat-catagcatgacttatgttgtgcttccat-tgcctttacagGTTAAACCAATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCATGAGGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATG
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gtatgttcttcctgtggttaatgcccaacatctcccttttgtactgactaaaaagtcagtggatagcagcattgcaataaatcttctgaacccaatactatcagttgatacatagtatatatctaacctcactttccgtgttcttttgtatgcattaacagGTACAACCAATCTCAGTTCAATATGGGCTTGGCATACCAGAGCATGATCAGGAAGGCAGGCTTATTACCTTGGAGTTTGATGATTTTTACTTG-------
upper sequence: LOC_Os01g58690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM5G800154_T01 (Zea mays), 3'ss of exon 5
-----------------------------gtatggtatttatg-tggttatgttcaagataagttactgtgc-atactaattct----agatagataaaatattttgatgaaaattagat-catagcatgacttatgttgtgcttccat-tgcctttacagGTTAAACCAATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCATGAGGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATG
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gtatgttctttctatggttaatgcccaacatctcccttttgtactgactaaaaactcagtggatagcagcattgcaataaatcttctgaacccaatactatcagttgatacatagtatatatctaacctcactttctgtgttcttttgtatgcattaacagGTACAACCAATCTCAGTTCAATATGGGCTTGGCATACCAGAGCGTGATCAGGAAGGCATGCTTATTACCTTGGAGTTTGATGATTTTTACTTGGTCAATG
upper sequence: LOC_Os01g58690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G139329_T02 (Zea mays), 3'ss of exon 3
---------------------------gtatggtatttatgtggttatgttcaagataagttactgt-gcatactaat------tctagata-gataaaatattttgatgaaaattagat-catagcatgacttatgttgtgcttccat-tgcctttacagGTTAAACCAATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCATGAGGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATG
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gtatgttcttcctgtggttaatgcccagcatctcccttttgtactgactaaaaagtcagtggatagcagcattgcaataaatcttctgaacccaatactatcagttgatacatagtatatatctaacctcactttccgtgttcttttgtatgcattaacagGTACAACCAATCTCAGTTCAATATGGGCTTGGCATACCAGAGCATGATCAGGAAGGCAGGCTTATTACCTTGGAGTTTGATGATTTTTACTTGGTCAATG
upper sequence: LOC_Os01g58690.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G134072_T02 (Zea mays), 3'ss of exon 4
-----------------------------gtatggtatttatg-tggttat---gttcaagataagttactgtgca-tactaattctagata-gataaaatattttgatgaaaattagat-catagcatgacttatgttgtgcttccat-tgcctttacagGTTAAACCAATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCATGAGGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATG
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gtatgttcttcttatggttaatgcccaacatctcccttttgtactgactaaaaagtcaatggatagcagcattgcaataaatcttctgaacccaatactatcagttgatacatagtatatatctaacctcactttccgtgttcttttgtatgcattaacagGTACAACCAATCTCAGTTCAATATGGGCTTGACATAACAGAGCGTGATCAGGAAGGCAGGCTTATTACCTTGGAGTTTGATGATTTTTACTTGGTCAATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27546396|gb|CA764589.2|CA764589EST: CATGCAGCGTCTCGAGGCTTGGCTATTCAGGGACTGCTGTAATTTCACGG GTTAAACCAATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCAT
genomic: CATGCAGCGTCTCGAGGCTTGGCTATTCAGGGACTGCAGTAATTTCACGGgtatggtatt ... gcctttacagGTTAAACCAATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgatgaaaattagatcatagcatgacttatgttgtgcttccattgcctttacagGTTAAACCAATTTCTGTCCAATACGGGATTGGCATACGTGAACATGATCATGAGGGCAGGGTTATTACTCTGGAGTTTGATGGTTTTTACTTGGTAAATG
ttttgat putative branch site (score: 4)
cttccattgccttt putative PPT
aaaattagatcata TA-rich tract