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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgccgcacgtaaaaatcttgcatcatattggaaattcctcattaaatacacccctctttttatttatttcctgttatgtctctagCTTCCTCACGCAGCAAGAAAAGGAGCAGAAACAGATGCTATGCCAATTGATGGAATGACCTTCCAATGTCCGTTCCTTGAGACTGTCATAATACAATGTT

Basic information

species Oryza sativa
transcript LOC_Os01g57920.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86492752|gb|CI135385.1|CI135385
EST:     TCCGTCAACTTTCGCCGAGACTAGGAGAACTGACATTGATGCAAGAGGAG                         CTTCCTCACGCAGCAAGAAAAGGAGCAGAAACAGATGCTATGCCAATTGAT
genomic: TCCTTCAACTTTCGCCGAGACTAGGAGAACTGACATTGATGCAAGAGGAGgtatgccgca ... atgtctctagCTTCCTCACGCAGCAAGAAAAGGAGCAGAAACAGATGCTATGCCAATTGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaattcctcattaaatacacccctctttttatttatttcctgttatgtctctagCTTCCTCACGCAGCAAGAAAAGGAGCAGAAACAGATGCTATGCCAATTGATGGAATGACCTTCCAATGTCCGTTCCTTGAGACTGTCATAATACAATGTT
                    cccctctttttattta  CT-rich tract
                          tttttatttatttcct  TA-rich tract